Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00388 AACAAGAACATCCTTCCTCCTTCTTCAAATTCTTTTCCAATTCGATTTCATCCATTTTGCAAAATCCCATCTGGGTTTGATTCTTTTGCATTATATCAGATTCACAGTTACACCATGATCTCTTCGCTGAGGCTTACATCTTCCAATTTCACTTCCACTGAAATTTTCAACAGAAAATCTCCACTTCTTAGGCCGAATCTACCGTTGCAGTCCCCAGATTGCAGTGTTCTTAAACATGTCGATCGATCTTTTTCAACCAATAAACCAATTCACATTTCGTCGGTTGAAAATCTTTCTTTGTCCACAAAATCATCTGAGCGTTCCACGGTGTGCAGGGCTTATGAGGCCGATTCGCGACGTCTGCAAATTAACATTGAGCTTCCTGATGAACAGACGACTCAGAAACTCAAAATTGGGCTCTATTTCGCCACTTGGTGGGCTTTGAATGTTGTGTTCAATGTCTATAACAAGAAGGTTCTTAATGCCTTCCCTTATCCTTGGCTCACCTCTACTCTCTCCCTCGCCGCTGGATCGCTCATGATGCTTGTTTCATGGGCCACTCGAATGGTCGATGCTCCCAAAACCGATTTGGATTTCTGGAATTCTCTATTGCCGGTCGCAGTGGCACATACGATTGGGCATGTTGCAGCAACTGTGAGCATGTCCAAGGTCGCAGTCTCTTTCACTCACATAATCAAGAGTGGGGAGCCGGCTTTCAGTGTGTTGGTCTCTAAGTTTTTGTTGGGTGAGATGTTTCCATTGCCTGTTTACTTATCTCTAATCCCAATCATTGGAGGCTGCGCTCTTTCCGCCATTACTGAGCTCAATTTCAACATAATTGGTTTCTCGGGAGCGATGATTTCAAACTTGGCATTTGTATTTAGAAACATATTCTCAAAGAAAGGGATGAAAGGAAAGTCAGTGAGTGGGATGAATTACTATGCTTGTCTCTCATTGTTGTCTCTGCTCATTCTTACTCCTTTCGCCATTGCCGTGGAGGGACCCAAATTGTGGGCTGAAGGTTTCCAAAAGGCTCTCTCTCAAATTGGTCCCAATTTCATTTGGTGGTTGGGAGCTCAAAGTATGTTCTATCACTTGTACAATCAAGTGTCTTACATGTCTCTTGATCAGATATCACCATTGACATTCAGCGTGGGAAACACAATGAAGAGAATATTCGTAATAGTGTCGTCCATTATCATCTTCCACACCCCGATCCGACCTGTGAACGCCATTGGAGCTGCTATTGCAATCCTTGGAACTTTCCTCTACTCGCAGGCAAAGCTGTGA 1290 43.57 NKNILPPSSNSFPIRFHPFCKIPSGFDSFALYQIHSYTMISSLRLTSSNFTSTEIFNRKSPLLRPNLPLQSPDCSVLKHVDRSFSTNKPIHISSVENLSLSTKSSERSTVCRAYEADSRRLQINIELPDEQTTQKLKIGLYFATWWALNVVFNVYNKKVLNAFPYPWLTSTLSLAAGSLMMLVSWATRMVDAPKTDLDFWNSLLPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSKFLLGEMFPLPVYLSLIPIIGGCALSAITELNFNIIGFSGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSLLSLLILTPFAIAVEGPKLWAEGFQKALSQIGPNFIWWLGAQSMFYHLYNQVSYMSLDQISPLTFSVGNTMKRIFVIVSSIIIFHTPIRPVNAIGAAIAILGTFLYSQAKL 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2420777 2423115 + MELO3C007378.2.1 Cme08g00388 334651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00388 429 PANTHER SOLUTE CARRIER FAMILY 35 75 428 - -
Cme08g00388 429 SUPERFAMILY Multidrug resistance efflux transporter EmrE 322 426 - -
Cme08g00388 429 Pfam Triose-phosphate Transporter family 136 425 IPR004853 -
Cme08g00388 429 SUPERFAMILY Multidrug resistance efflux transporter EmrE 178 272 - -
Cme08g00388 429 PANTHER GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, CHLOROPLASTIC 75 428 - -
Cme08g00388 429 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 136 428 IPR004696 GO:0016021|GO:0022857|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02272 Cme-Chr6:29779107 Cme08g00388 Cme-Chr8:2420777 0 dispersed
Cme08g00388 Cme-Chr8:2420777 Cme10g00361 Cme-Chr10:2327877 6.87E-80 dispersed
Cme08g00388 Cme-Chr8:2420777 Cme09g00397 Cme-Chr9:3569311 7.45E-68 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00388 K15283 - csv:101216621 701.434