Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00402 ATGGCTTGCTCAAACTTGGCAATGTGGGTATCCTCAAAACCGTCTTCATCCGATTCCTCTGCTCTTTCTTTTCGGCCAGTCAATCCTCTTCAAGTTCCTTCCCAAGGCTCCGCTTCGCGATCCTCATCTGTCTCTCCCATTCAGTGCGGTCTACGTGAGCTTCGAGAACGGATCGATTCAGTGAAGAACACCCAGAAAATTACTGAGGCTATGAAGCTTGTTGCTGCTGCCAAAGTTCGTAGAGCTCAAGAAGCTGTTGTTAATGGAAGACCATTCTCGGAATCTCTAGTTGAAGTACTTTACAATATCAATGAGCAGCTCCAAACCGAGGATATAGATGTTCCTCTGACTAAAGTTCGACCAGTCAAGAAGGTTGCTTTGATTGTTGTAACAGGGGATCGAGGCCTCTGCGGCAGTTTCAATAACATGATCATAAAAAAGGCAGAATCCAGAATCGCGGAATTGAAGACCCTTGGCCTTGATTATACAGTTATTAGCGTCGGCAAGAAGGGGAACTCGTATTTTTCTCGCCGGCCTTACATCCCAGTAGATAGATTTCTCGAGGGCGGTTCACTTCCAACAGCTAAAGAAGCTCAAGCCATTGCAGACGATGTTTTTTCCCTCTTTATAAGCGAAGAGGTCGACAAAGTCGAGCTTCTGTACACCAAATTCGTGTCATTAGTTAAATCAGACCCGGTGATCCACACTTTGCTTCCATTGTCACCTAAAGGAGAGATCTGTGATATAAATGGTGTTTGTGTTGATGCCGCAGAGGATGAGTTCTTCAGATTGACGACAAAAGAAGGAAAATTGACTGTAGAGAGAGATGCCGTGAGGACAAAAACCTCAGATTTCTCCCCAATTTTGCAGTTTGAGCAAGACCCAGTTCAGATTCTTGATGCTTTATTACCTCTCTATTTGAACAGTCAAATTTTGAGATCATTACAGGAATCGTTAGCTAGTGAGCTTGCTGCTAGAATGAGTGCCATGAGCAATGCAACTGATAATGCCAGCGAGTTGAAGAAGACATTGTCTATTGTTTACAACAGACAGCGGCAAGCCAAAATCACTGGCGAGATTTTGGAGATTGTTGCCGGTGCCAACGCTTTGACTTGA 1116 44.44 MACSNLAMWVSSKPSSSDSSALSFRPVNPLQVPSQGSASRSSSVSPIQCGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSESLVEVLYNINEQLQTEDIDVPLTKVRPVKKVALIVVTGDRGLCGSFNNMIIKKAESRIAELKTLGLDYTVISVGKKGNSYFSRRPYIPVDRFLEGGSLPTAKEAQAIADDVFSLFISEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTVERDAVRTKTSDFSPILQFEQDPVQILDALLPLYLNSQILRSLQESLASELAARMSAMSNATDNASELKKTLSIVYNRQRQAKITGEILEIVAGANALT 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2482843 2483958 + MELO3C007390.2.1 Cme08g00402 334665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00402 371 PRINTS ATP synthase gamma subunit signature 122 141 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cme08g00402 371 PRINTS ATP synthase gamma subunit signature 215 232 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cme08g00402 371 PRINTS ATP synthase gamma subunit signature 317 336 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cme08g00402 371 PRINTS ATP synthase gamma subunit signature 348 369 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cme08g00402 371 Hamap ATP synthase gamma chain [atpG]. 48 370 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cme08g00402 371 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 50 370 IPR035968 GO:0015986|GO:0045261|GO:0046933
Cme08g00402 371 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 1 370 - -
Cme08g00402 371 PANTHER ATP SYNTHASE GAMMA CHAIN 1 370 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cme08g00402 371 Pfam ATP synthase 51 370 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cme08g00402 371 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 50 370 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cme08g00402 371 MobiDBLite consensus disorder prediction 1 23 - -
Cme08g00402 371 Gene3D - 118 241 - -
Cme08g00402 371 Gene3D ATP synthase, gamma subunit, helix hairpin domain 50 117 - -
Cme08g00402 371 Coils Coil 51 71 - -
Cme08g00402 371 CDD F1-ATPase_gamma 51 367 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cme08g00402 371 ProSitePatterns ATP synthase gamma subunit signature. 356 369 IPR023632 -
Cme08g00402 371 Gene3D ATP synthase, gamma subunit, helix hairpin domain 268 370 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme08g00402 Cme12g01491 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00402 Cme-Chr8:2482843 Cme12g01946 Cme-Chr12:25376295 7.93E-24 dispersed
Cme06g02250 Cme-Chr6:29483655 Cme08g00402 Cme-Chr8:2482843 1.12E-145 transposed
Cme12g01491 Cme-Chr12:22531458 Cme08g00402 Cme-Chr8:2482843 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00402 K02115 - csv:101218747 670.618