Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00410 ATGGGGAAGAAGAAGCTAAGGCTGCAAAATCAAGGCTCCCATGTTATATTGGACAATGGGTTGTTGAAGGTGACGATATCAAACCCCCAAGGATATTGGGATATCAACTGGAGTTGGCCTGGAGGCAAGGACAGATACCAATTGCTTAAAGGATCTGAATTCAATGTCATCAACTCAAGTGATGACACGATTGAGATATCATTCAGGAAAGATTTTGACCTGTCAACTCGAGGCAACAAACTTCCACTTGGTGTGGACATAAGGTACATAATGAGGACTGGTATTCCAGGCTTCTATTGCTATGCAATCTACGAGCACCCATCAGAATGTCGAGCTTTCGATCTTGCTCAGACAAGAATGGTGTTTAAGCTGCGACAAGAGAAGTTCCACTACATGGCAATTTCAGATGAGAAGCAAAGAATAATGCCAATGCCAGAGGATTTGCGTCCAGGCAGAGGTGAACAACTAATTGTACCTGAGTCAGTCCTGCTTGTAAATCCCATTAACCCTGATCTGAAAGGAGAGGTAGATGATAAGTACCAATACTCGGAGGATAACAAAGATGGAGGAGTTCATGGATGGATAAGTTCCAGCCCAAACAACATAGGTTTTTGGATAGTTTTTCCAAGCTATGAGTTCCGAAATGGAGGTCCTACAAAGCAAAATCTGACAGTCCATACTGGTCCTACATGTCTTGCTCAATGTTTGATGCAACAGATGTTTCATGGAACCCATTACATTGGAGAAGATATACTCACACATATCAAGGAGGGAGAGGCATGGAGAAAGGTCTTTGGTCCTATTCTTATATACCTTAACTCCACCTCAGATGTATCAGAGGCACACAATCTATGGATAGATGCAAAGGAACAGAGAATGCAAGAGGAAACGGCATGGCCATACAATTTTGTCTCTTCATCTTTTTATTTAATGGCTAGAGAACGTGGTTCGATTTCAGGAAGACTATTAGTCCGAGACAGGTTTATTTCAAGTTCTCCCATCCCTGCAAGAGATGCACATGTTGGTCTATCTGCTGCTAGAGAAGAAGGTGCCTGGCAAACGGAAAGCAAGGAATATCAATTTTGGGTAAAGACAGATTCCAATGGAGATTTCACTATTAGAAACATTATTCCTGGAGTCTATGGACTTCATGGTTGGGTACCTGGATTCATTGGTGACTATCTTCACAAATCACTAGTAACAGTATCAGCAGGATCTTATACCCATCTTGGCATTCTGACCTATAGTCCTCTCAGAGATGGTCCTACTGTATGGGAGATTGGTTTTCCTGACCGTACTGCTAATAGCTTCTATGTTCCTGATGTGAATCCGATGTATGTCAACAAGTTATTCCTTCATAGCCCAGAAAAGTTCAGGCAATATGGTTTATGGGATGGATACAGCGATTCACATCCAAGAAATGACCAAATTTTCACTGTGGGTATCAATGATCCGAAAAAAGATTGGTTCTTTGCTCAAGTTTGCAGGTTTGTACTTTGCAAATCATCACATATATTGACAAAATGA 1527 41.52 MGKKKLRLQNQGSHVILDNGLLKVTISNPQGYWDINWSWPGGKDRYQLLKGSEFNVINSSDDTIEISFRKDFDLSTRGNKLPLGVDIRYIMRTGIPGFYCYAIYEHPSECRAFDLAQTRMVFKLRQEKFHYMAISDEKQRIMPMPEDLRPGRGEQLIVPESVLLVNPINPDLKGEVDDKYQYSEDNKDGGVHGWISSSPNNIGFWIVFPSYEFRNGGPTKQNLTVHTGPTCLAQCLMQQMFHGTHYIGEDILTHIKEGEAWRKVFGPILIYLNSTSDVSEAHNLWIDAKEQRMQEETAWPYNFVSSSFYLMARERGSISGRLLVRDRFISSSPIPARDAHVGLSAAREEGAWQTESKEYQFWVKTDSNGDFTIRNIIPGVYGLHGWVPGFIGDYLHKSLVTVSAGSYTHLGILTYSPLRDGPTVWEIGFPDRTANSFYVPDVNPMYVNKLFLHSPEKFRQYGLWDGYSDSHPRNDQIFTVGINDPKKDWFFAQVCRFVLCKSSHILTK 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2518594 2523247 - MELO3C007399.2.1 Cme08g00410 334673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00410 508 Pfam Polysaccharide lyase family 4, domain III 423 496 IPR029411 -
Cme08g00410 508 SUPERFAMILY Starch-binding domain-like 310 412 IPR013784 GO:0030246
Cme08g00410 508 CDD RGL4_M 314 411 IPR029413 -
Cme08g00410 508 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 17 498 - -
Cme08g00410 508 Gene3D - 311 412 - -
Cme08g00410 508 PANTHER POLYSACCHARIDE LYASE FAMILY 4 PROTEIN 17 498 - -
Cme08g00410 508 Gene3D - 6 287 IPR014718 GO:0030246
Cme08g00410 508 Pfam Rhamnogalacturonate lyase family 31 176 IPR010325 -
Cme08g00410 508 Pfam Polysaccharide lyase family 4, domain II 338 409 IPR029413 -
Cme08g00410 508 CDD RGL4_N 6 281 - -
Cme08g00410 508 SUPERFAMILY Galactose-binding domain-like 420 496 IPR008979 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00410 Cme-Chr8:2518594 Cme08g00713 Cme-Chr8:4750323 6.37E-149 dispersed
Cme08g00410 Cme-Chr8:2518594 Cme04g00225 Cme-Chr4:1705493 7.47E-180 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00410 K18195 - csv:101220336 994.956