Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00421 ATGGACAAAGGATGGGGTCTAACTCTTCGTGATTCTGATCATCAGTCAATTGGGTTCTTCTCAAACAAGCAACCACCACCCCCACCCCCACCCACTCTCAATTCCTTCCAGAGAATGTTTCAAGGTTTAGAATTCTCCGCAAAACTTGGCCACACCGACTCCACTTCCGACGATAATAATCGTTTGGCCGTCGAGGTCGATTTTTTCTCCGCTAAGAAAAGACTGGTTGATGATCTTGAGGCCGATCAAGACTCCAAACCTACTTCTACTACTTCTATCATTAAAGACGATAAAGCTTTGACCCCTCCGCCTCCCCCCACAACTTCCTTCAATCTTGTTAACACTGGATTGCATCTGTTAACTGCTAACACCGGAAGCCATCAATCAACCGTTGATGATGGAATTTCATCAGATGGTGAAGATAAACGAGCCAAAAACGAGATTATTGAAAAAATTTGGGTTGAATTTGAAATTGGGGATGCACAGCTAGCGCAGCTACAAGTGGAGCTTCAGCGAATGAACGCAGAGAATCACAAGCTAAGGGACATGCTAAGCCATGTGAGCAACAACTATAGTTCTTTACAAATGCATCTCTTGACCTTAATGCAACAGCAGCAGCAACAACAAAATCACTCCTCCGAACCCGCTAATCAACGAGAGATTGCTGGGGAGAAGAAATCCACGGAAATAAAACATGAAGTTGGAAAGGTAATGGTACCAAGACAATTTATGGATCTAGGACCAAGTGGAAATAACAACAACATGGGTGAAAGCGAAGAATTATTATGTAATTCCTCATCGGATGAAAGAACTCGTTCTGGGTCTCCATTGAACATCAACAACAACAATACCGAAACCGCTTCCAAAAAAAGAGATCACGCGGAAATCATGCCTCCTAATTCCGATCACGAAAATTCCAAAAGATCCATCCCCAGAGAAGATAGCCCCGAATCAGAATCTCAGGGTTGGGGTCCCAACCATAAGACCCCCCGCTTCAACAATTCTTCTAATTCTAAACCAATTGACCAATCCACCGAAGCTACCATGCGTAAAGCCCGTGTCTCAGTCCGTGCTCGTTCCGAAGCTCCCATGATTTCCGATGGGTGTCAATGGCGGAAATATGGCCAAAAAATGGCTAAAGGAAACCCTTGTCCACGAGCCTATTATCGCTGCACAATGGCTGTGGGTTGCCCTGTTCGCAAACAAGTCCAACGTTGTGCTGAAGATAGGACTATATTGATAACAACTTACGAAGGCAACCACAACCACCCACTTCCGCCGGCGGCGATGGCGATGGCGTCAACCACGACAGCGGCGGCTACTATGTTATTATCAGGGTCTATGTCAAGTGCGGACCATAATTTAATGAACCCAAATTTATTAGCTCGAGCCATACTTCCATGTTCTTCAAGCATGGCTACAATTTCAGCTTCAGCTCCATTTCCAACAATCACATTAGACCTCACTCACAGTCCAAACCCATTGCAGTTTCAAAGACCCACCGCAGCGCCTTTCCACGTGCCGTTCCCTGGCGGACAACCACCATCAGCCGCCGCCCAATTGCCTCAAGTTTTGGGACAAGCCTTATATAACAATCAGTCAAAATTCTCCGGGCTACAGCTTTCTCATGAAATGGGAGCTAATTCCTCTCCCTTGGGTCATCACCAAATTACACAACCCGCAACTCCAGCCCAACCTGGTGGTGCTTCTTTTGCTGACACGTTGAGTGCCGCAACGGCTGCTATCACCGCTGATCCCAATTTCACAGCCGCGCTCGCCGCCGCTATCTCCTCCATTATCGGCGGAACCCATCCCAACAATAATAGCAACACCAATACCAGTAATAATACAACAACCAACAACAACGGAAGCAGCAACAACAACAGCAAAATTAGCAGTTTTCCTGGAAATTAA 1914 46.24 MDKGWGLTLRDSDHQSIGFFSNKQPPPPPPPTLNSFQRMFQGLEFSAKLGHTDSTSDDNNRLAVEVDFFSAKKRLVDDLEADQDSKPTSTTSIIKDDKALTPPPPPTTSFNLVNTGLHLLTANTGSHQSTVDDGISSDGEDKRAKNEIIEKIWVEFEIGDAQLAQLQVELQRMNAENHKLRDMLSHVSNNYSSLQMHLLTLMQQQQQQQNHSSEPANQREIAGEKKSTEIKHEVGKVMVPRQFMDLGPSGNNNNMGESEELLCNSSSDERTRSGSPLNINNNNTETASKKRDHAEIMPPNSDHENSKRSIPREDSPESESQGWGPNHKTPRFNNSSNSKPIDQSTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASTTTAAATMLLSGSMSSADHNLMNPNLLARAILPCSSSMATISASAPFPTITLDLTHSPNPLQFQRPTAAPFHVPFPGGQPPSAAAQLPQVLGQALYNNQSKFSGLQLSHEMGANSSPLGHHQITQPATPAQPGGASFADTLSAATAAITADPNFTAALAAAISSIIGGTHPNNNSNTNTSNNTTTNNNGSSNNNSKISSFPGN 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2563779 2566835 - MELO3C007409.2.1 Cme08g00421 334684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00421 637 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 56 621 IPR044810 GO:0003700
Cme08g00421 637 PANTHER WRKY TRANSCRIPTION FACTOR 31-RELATED 56 621 - -
Cme08g00421 637 MobiDBLite consensus disorder prediction 206 230 - -
Cme08g00421 637 MobiDBLite consensus disorder prediction 246 285 - -
Cme08g00421 637 MobiDBLite consensus disorder prediction 80 106 - -
Cme08g00421 637 MobiDBLite consensus disorder prediction 602 637 - -
Cme08g00421 637 MobiDBLite consensus disorder prediction 286 315 - -
Cme08g00421 637 Gene3D WRKY domain 350 427 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme08g00421 637 MobiDBLite consensus disorder prediction 543 565 - -
Cme08g00421 637 ProSiteProfiles WRKY domain profile. 360 426 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme08g00421 637 Pfam WRKY DNA -binding domain 367 424 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme08g00421 637 SMART WRKY_cls 365 425 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme08g00421 637 Coils Coil 163 190 - -
Cme08g00421 637 MobiDBLite consensus disorder prediction 319 350 - -
Cme08g00421 637 MobiDBLite consensus disorder prediction 243 359 - -
Cme08g00421 637 SUPERFAMILY WRKY DNA-binding domain 358 426 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme08g00421 637 MobiDBLite consensus disorder prediction 543 569 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01727 Cme-Chr4:24790872 Cme08g00421 Cme-Chr8:2563779 1.34E-30 dispersed
Cme08g00421 Cme-Chr8:2563779 Cme12g01756 Cme-Chr12:24233364 1.51E-44 dispersed
Cme01g00436 Cme-Chr1:3169672 Cme08g00421 Cme-Chr8:2563779 1.58E-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41762 PF03106 WRKY 5.70E-24 CL0274 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00421 - - csv:101222214 1086.25