Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00423 GTTTTAAACCCTCCCTGCCCCGGTCAATATCGTGTGTTCCACCAATTTAAACTCTCACATTTTGCCTATAATTCACTTCCATTTCTCAAACAAAATAGTATCATCCCAAACCCCATGGCTTTCCCATTATTATTATTATCAATATTCCTCTCTTTCCTACCCACAATTATCTCCACGCCCAAACCCAACAACTACTATGACAAACCAATATCCCTCAACCCCATCGACGCATGCTGGCGGAACAACCCCAATTGGGCAGCCAACCGCCGCGCCCTGGCCGACTGTGCCGTCGGGTTTGGCAGCGACGCCTTGGGAGGCAAATTCGGGTCAATCTACGTAGTCACAGACCCATCGGACGACCCGGAATATCCAGAACCCGGAACGCTGCGCTTTGGGGTGATCCAACTGAAGCCATTATGGATTGTGTTCGCAAGAGATATGGCGATTACTCTTAAAAGAGAATTGATGGTGAATAGCTTTAAGACTATAGATGGGCGAGGGGCAAAAGTAGAAATTAGCAATGGGCCTTGTGTTACGATCCAAAATGTGAGCCACGTCATAATCCACGGGATCAGCATTCATGATTGTAAGCCGGGAAAGCCTGGACGTGTGAGGAGCACGGTGACTCATTGTGGTGACCGCCAAGAATCGGACGGTGACGCCATTTCTATATTTAGTTCTTCTCATATTTGGATCGACCATTGCTATTTGGCTCGATGTACTGATGGGCTCATTGACGTCATTCATGCCTCCACTGCCGTCACCATCTCCAATAATTACTTCTCTCAACATGATAAAGTGATCCTTCTTGGTCACAACGATGAATTTAGAGATGATAGAATCATGAGAGTGACGGTAGCTTTCAATCGTTTCGGGGCTGGACTTGTTCAAAGAATGCCCAGGGTGAGATTTGGATATGCTCATGTTGCCAATAATTGGTACAACAAATGGGAAATGTATGCGATGGGTGGCAGTGCAGATCCAACCATCTTCAGCCAAGGAAATTACTTCATGGCTCCCGACGATCCTTTCTCAAAGCAGGTAACAAAGCGAGAGGTTTATGAGAGTGGATGGAAGACATGGAAATGGAGATCTTCAAATGATGTGTTTATGAATGGGGCTTATTTCATCCCAACAGGCTGGGGATCTTGTACCCCTTTCTACACTCGAGCTCAAGCTTTTCCTGTTGCTCATGGCTCTTTAGCTCCTCTTTTGACTATTGCCGCCGGCCCTTTGCCTTGCGTTCTTGCCAAACCTTGTTGA 1263 46.63 VLNPPCPGQYRVFHQFKLSHFAYNSLPFLKQNSIIPNPMAFPLLLLSIFLSFLPTIISTPKPNNYYDKPISLNPIDACWRNNPNWAANRRALADCAVGFGSDALGGKFGSIYVVTDPSDDPEYPEPGTLRFGVIQLKPLWIVFARDMAITLKRELMVNSFKTIDGRGAKVEISNGPCVTIQNVSHVIIHGISIHDCKPGKPGRVRSTVTHCGDRQESDGDAISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYFSQHDKVILLGHNDEFRDDRIMRVTVAFNRFGAGLVQRMPRVRFGYAHVANNWYNKWEMYAMGGSADPTIFSQGNYFMAPDDPFSKQVTKREVYESGWKTWKWRSSNDVFMNGAYFIPTGWGSCTPFYTRAQAFPVAHGSLAPLLTIAAGPLPCVLAKPC 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2582156 2584848 - MELO3C007411.2.1 Cme08g00423 334686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00423 420 Gene3D - 72 413 IPR012334 -
Cme08g00423 420 SUPERFAMILY Pectin lyase-like 93 417 IPR011050 -
Cme08g00423 420 SMART amb_all 146 343 IPR002022 -
Cme08g00423 420 Pfam Pectate lyase 153 337 IPR002022 -
Cme08g00423 420 PANTHER PECTATE LYASE 18-RELATED 66 418 IPR045032 GO:0030570
Cme08g00423 420 PRINTS Pollen allergen Amb family signature 298 317 IPR018082 -
Cme08g00423 420 PRINTS Pollen allergen Amb family signature 218 239 IPR018082 -
Cme08g00423 420 PRINTS Pollen allergen Amb family signature 320 339 IPR018082 -
Cme08g00423 420 PRINTS Pollen allergen Amb family signature 154 170 IPR018082 -
Cme08g00423 420 PRINTS Pollen allergen Amb family signature 118 143 IPR018082 -
Cme08g00423 420 PRINTS Pollen allergen Amb family signature 391 414 IPR018082 -
Cme08g00423 420 PRINTS Pollen allergen Amb family signature 95 112 IPR018082 -
Cme08g00423 420 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Cme08g00423 420 PANTHER PECTATE LYASE 66 418 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme08g00423 Cme12g01514 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00423 Cme-Chr8:2582156 Cme06g00410 Cme-Chr6:2629054 3.62E-144 dispersed
Cme08g02365 Cme-Chr8:30568265 Cme08g00423 Cme-Chr8:2582156 2.20E-50 dispersed
Cme12g02022 Cme-Chr12:25778249 Cme08g00423 Cme-Chr8:2582156 1.88E-104 dispersed
Cme12g01514 Cme-Chr12:22681442 Cme08g00423 Cme-Chr8:2582156 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00423 K01728 - csv:101210816 744.577