Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00429 ATGGATGGTCCAAGTGGGAATTGTTCTGGAGGTATGATGAATTTTGGTGATCAAAATAACAACAACAACAACAACAATAATGGGTTATGTTCTATGATGATGATGATGCCGTTAATCTCTGCTTCTCAACAAGGTGGAGATGGTTCTTCATGTACTCCATTTCTTCCTCTTCCTCCTCCCAATTACAACAACACCAACAACAACAATAATTCTATTTGTAATTACTTCATGGATGAAACCAACAACAACAACAATAACAACAGCGAGAGTAGTAATGGAGCCAATTCTTGTTGTGAAGTCAAGGCTAAAATCATGGCTCATCCTCACTACCACCGTCTTCTTACTGCCTATGTGAATTGTCGTAAGGTGGGGGCGCCGCCGGAAGTGGTGGCACGGCTTGAAGAAGCGTGTGCAAGTGCGGTGACAATGAGTAGTGGTAATAATGGTGGTGGGTGTATTGGGGAAGATCCAGCGCTTGATCAGTTTATGGAAGCTTATTGTGAGATGCTTACTAAATATGAACAAGAACTTTCCAAACCCTTTAGAGATGCTATGCTCTTTCTTCAACGAATTGACTCTCAATTCAAAGCTCTCTCTATTTCCTCCTCTCATCTCCCTCCAGCTTGTGGCGAGGCGTTTGATAGGAACGGATCATCTGAAGAGGAAGTTGATATCAATGGGCACTCAATCGACCCACAAGCGGAAGATCGTGAACTGAAAGGTCAGCTTCTACGCAAATACAGCGGATACTTGGGCAGTTTGAAGCAAGAATTCATGAAGAAAAGGAAGAAAGGGAAGTTACCTAAGGAAGCTAGACAACAACTTCTGGATTGGTGGAGTAGACATTACAAATGGCCGTATCCATCTGAATCACAGAAGTTGGCTTTAGCTCAATCAACTGGGTTAGATCAAAAGCAAATCAACAATTGGTTCATTAACCAAAGAAAAAGACACTGGAAACCATCAGAAGATATGCAATTTGTGGTGATGGATGCTGCTCATCCACAGTATTACATGGATGCTGTCTTAGGGAATCCTTTTCCCTTGGATATATCCCCTGCTCTACTTTAA 1071 42.11 MDGPSGNCSGGMMNFGDQNNNNNNNNNGLCSMMMMMPLISASQQGGDGSSCTPFLPLPPPNYNNTNNNNNSICNYFMDETNNNNNNNSESSNGANSCCEVKAKIMAHPHYHRLLTAYVNCRKVGAPPEVVARLEEACASAVTMSSGNNGGGCIGEDPALDQFMEAYCEMLTKYEQELSKPFRDAMLFLQRIDSQFKALSISSSHLPPACGEAFDRNGSSEEEVDINGHSIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAQSTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPQYYMDAVLGNPFPLDISPALL 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2617977 2621826 - MELO3C007417.2.1 Cme08g00429 334692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00429 356 SMART KNOX1_2 98 142 IPR005540 GO:0003677|GO:0005634
Cme08g00429 356 SMART ELK_2 238 259 IPR005539 GO:0003677
Cme08g00429 356 ProSiteProfiles ELK domain profile. 238 258 IPR005539 GO:0003677
Cme08g00429 356 Gene3D - 263 325 - -
Cme08g00429 356 SMART KNOX2_2 149 200 IPR005541 GO:0003677|GO:0005634
Cme08g00429 356 Pfam KNOX2 domain 152 198 IPR005541 GO:0003677|GO:0005634
Cme08g00429 356 SUPERFAMILY Homeodomain-like 260 334 IPR009057 -
Cme08g00429 356 ProSitePatterns 'Homeobox' domain signature. 296 319 IPR017970 GO:0000981|GO:0006355
Cme08g00429 356 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 345 - -
Cme08g00429 356 Pfam ELK domain 238 259 IPR005539 GO:0003677
Cme08g00429 356 Pfam Homeobox KN domain 278 317 IPR008422 GO:0003677|GO:0006355
Cme08g00429 356 ProSiteProfiles 'Homeobox' domain profile. 258 321 IPR001356 GO:0003677
Cme08g00429 356 SMART HOX_1 260 325 IPR001356 GO:0003677
Cme08g00429 356 Pfam KNOX1 domain 100 138 IPR005540 GO:0003677|GO:0005634
Cme08g00429 356 PANTHER - 6 345 - -
Cme08g00429 356 CDD homeodomain 270 322 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01544 Cme-Chr5:24801281 Cme08g00429 Cme-Chr8:2617977 9.59E-67 dispersed
Cme07g00094 Cme-Chr7:577212 Cme08g00429 Cme-Chr8:2617977 9.03E-30 dispersed
Cme08g00429 Cme-Chr8:2617977 Cme10g00541 Cme-Chr10:3457746 7.49E-68 dispersed
Cme03g02134 Cme-Chr3:28553863 Cme08g00429 Cme-Chr8:2617977 1.73E-49 transposed
Cme07g00247 Cme-Chr7:1603493 Cme08g00429 Cme-Chr8:2617977 6.03E-27 transposed
Cme01g00454 Cme-Chr1:3270374 Cme08g00429 Cme-Chr8:2617977 1.60E-123 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41763 PF03791 KNOX2 5.60E-20 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00429 - - csv:101211566 641.343