Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00439 ATGGCGACCTCATGTTTCGGTTCACTTAGGATTCGTAAATCAAAAAGCAAACCCTTATCAACCCCTTCCTCTTTGAAATCCCAGATGAATTCTGAAATGGAAAATATGGAAAGGAGAAGATTTGATAGTTTGGAATCGTGGTCGATGATCCTAGAGTCTGAAAATGTTGAAACTTGGGAGACATCAAAGGAAGATCAGGAAGAGTGGACAGCTGATTTATCTCAACTCTTCATTGGTAACAAATTCGCCTCTGGCGCTCACAGTCGGATATACCGTGGAATTTACAAGCAGAGAGCCGTTGCTGTGAAGATGGTGAGAATTCCAAACCAAAAGGAGGAAACAAGAGCCAAACTCGAGCAACAGTTCAAGTCCGAAGTTGCCTTGCTTTCTCGTCTCTTTCATCCCAACATTGTTCAGTTCATTGCAGCCTGTAAAAAGCCACCCGTATACTGCATAATTACAGAGTATATGTCACAAGGAACTCTGAGGATGTATCTAAACAAGAAAGAGCCATATTCACTCTCCACAGAAACAATACTGAGGTTAGCTCTAGACATATCAAGAGGAATGGAATACCTCCATTCCCAAGGAGTAATCCACAGAGATCTCAAGTCAAACAACTTGCTTCTAAACGATGAAATGAGAGTAAAAGTAGCCGATTTCGGAACCTCCTGTCTCGAGACACAGTGCCAAGAATCAAAAGGGAACATGGGAACTTACCGATGGATGGCGCCGGAGATGATCAAAGAGAAGCCTTATACTCGCAAAGTTGATGTGTACAGCTTTGGGATTGTGCTGTGGGAACTCACCACGGCTCTGCTTCCCTTTCAAGGAATGACCCCCGTGCAAGCTGCCTTTGCCGTCGCCGAGAAGGTACCAAATCTCAAACTCCCCCTTCGACAAAATGAGAGACCACCATTGCCGGCAAGTTGTCAGCCGGCACTAGCCCACCTCATTAAACGGTGTTGGGCAGCGAATCCGTCGAAGCGGCCGGATTTCAGCGACATTGTGGCGGCGTTAGAGAAATACGACGAGTGTGTGAAAGAGGGACTTCCTCTTGCACACCATAGAAGATTGGTAAACAAAAACGCCATTATTGAACGCTTGAAAGCTTGTGCTTCAACCAGCTCTTCAATACCTGTACATGCTTGA 1152 45.4 MATSCFGSLRIRKSKSKPLSTPSSLKSQMNSEMENMERRRFDSLESWSMILESENVETWETSKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPNQKEETRAKLEQQFKSEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSTETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETQCQESKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKVPNLKLPLRQNERPPLPASCQPALAHLIKRCWAANPSKRPDFSDIVAALEKYDECVKEGLPLAHHRRLVNKNAIIERLKACASTSSSIPVHA 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2697311 2700332 + MELO3C007427.2.1 Cme08g00439 334702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00439 383 CDD STKc_MAP3K-like 83 340 - -
Cme08g00439 383 MobiDBLite consensus disorder prediction 13 32 - -
Cme08g00439 383 SUPERFAMILY Protein kinase-like (PK-like) 51 340 IPR011009 -
Cme08g00439 383 SMART serkin_6 76 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00439 383 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 371 - -
Cme08g00439 383 Pfam Protein tyrosine and serine/threonine kinase 78 340 IPR001245 GO:0004672|GO:0006468
Cme08g00439 383 Gene3D Phosphorylase Kinase; domain 1 65 158 - -
Cme08g00439 383 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 9 371 - -
Cme08g00439 383 MobiDBLite consensus disorder prediction 14 31 - -
Cme08g00439 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Cme08g00439 383 ProSiteProfiles Protein kinase domain profile. 76 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00439 383 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672|GO:0006468
Cme08g00439 383 PRINTS Tyrosine kinase catalytic domain signature 192 210 IPR001245 GO:0004672|GO:0006468
Cme08g00439 383 PRINTS Tyrosine kinase catalytic domain signature 238 248 IPR001245 GO:0004672|GO:0006468
Cme08g00439 383 PRINTS Tyrosine kinase catalytic domain signature 154 167 IPR001245 GO:0004672|GO:0006468
Cme08g00439 383 Gene3D Transferase(Phosphotransferase) domain 1 159 373 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme08g00439 Cme12g01515 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01215 Cme-Chr5:19656771 Cme08g00439 Cme-Chr8:2697311 2.42E-96 dispersed
Cme06g02352 Cme-Chr6:30841256 Cme08g00439 Cme-Chr8:2697311 4.29E-82 dispersed
Cme08g00439 Cme-Chr8:2697311 Cme12g01341 Cme-Chr12:21400507 5.96E-106 dispersed
Cme12g01700 Cme-Chr12:23879671 Cme08g00439 Cme-Chr8:2697311 1.27E-28 dispersed
Cme08g00439 Cme-Chr8:2697311 Cme08g00296 Cme-Chr8:1888947 4.71E-114 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65062 PF07714 PK_Tyr_Ser-Thr 3.90E-65 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00439 - - cmo:103484647 731.095