Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00456 ATGCAAGCATCTCACAACCGGCAGGCTTCATCTATGATCCATGAGATGGATCCATACTATTTATCTCGTTTTCACGTATTGGGAAACCACGTCTCTTCTGACGCAAGCAGCCAGGGAAACAGTGTTAACTTCTCTTCCTATAAGGATCAGTTCTTTACTCTGGAGTCATTCCCGGCTACTGCTGATTTGAGTGGCTCTAATTCTCCTTCAGCTGGGAGTGTTCTGTCGTCTAGGAGCCCCTTCTCACCTCAGGGTTCTCAATCATGCTCATCGGACCAACACCATTCCTTTGAGAACACATGTGGATCACCATTGAGTGGATGCTCTGTAACTGATGATGACAACGACATAAAGCACAAGCTGAAAGAATTAGAAATTTCTTTGCTGGGGCCTGAATCTGATATGGTGGATAGCTGCTACTGTTCTTTCAGGGGTGGGGCGCATCAAGATGCTTCAGTGGCAAGGAGGAACTGGAATCAAGTGGTTGAAATGATTCCTAAACTAAATCTTCAGGACACGCTTATCCATTGTGCCCAAGCGATTCATGATTCTGATCTAAACGTGGCAACACTGTTTATGGATGTTTTAGGGCAGATGGTTTCCGTCTTTGGTGATCCAGCCCAGAGAGTGGGAGCTTACTTGTTGGAAGGGCTTAGAGCGAGGTTGGAACGATCTGGGAGTGCAATATACAAGGCCCTAAAGTGCAAAGAGCCAACAAGCTCTGAACTAATGTCATATATGTCTATTCTATTCCAGATCTGCCCATACTTCAAATTTGGTTACACATCTGCTAATGCTGTAATTTGGGAGGCCATGGTCAATGAACCCATAATCCACATCATTGATTTTCAGATTGCACAGGGTAGTCAGTATATATCTCTCATCCAGGATCTTGCCAATCGGCCTGGCGGACCCCCAGCTCTTCTTCGCATTACGGGTGTGGATGATTCGCAATCAGCTCATGCTCGAGGAGGGGGACTACAAATCGTGGGACAGAACTTAGCTCAGCTGGCTCAATCAAAAGGAATTCCTTTCCAATTTCATGCTGCTGCAATGTCCGGTTGTGACGTTGAACACAGTAATCTCATAATACAACCAGGAGAAGCATTGGCTGTAAATTTTCCATACACCTTACACCACATGCCAGACGAGAGCGTGAGCACACAGAATCATCGAGACCGGCTTCTTAGGCTGGTTAAAAGTCTCTCACCCAAAGTAGTAACCATTATTGAGCAGGAGTCCAACACCAACACATCTCCATTCCTTCTTCGTTTCATAGAGACGCTAGATTATTACACTGCTATGTTTGAGTCAATAGATGTAGCTCGTTCAAGAGATGACAAGCAGAGAATCAGGGCAGAGCAACACTGTGTGGCCCGAGACATAGTGAACATGGTAGCTTGTGAAGGATTCGAAAGGGTAGAACGTCATGAACTCCTTGGCAAGTGGAGGATGAGAATGAGGATGGCTGGTTTCACTCTATGTCCAATGAGCTCATCCGTAACTGGAGCTGTTAGAAATATGTTGAGGGATTTCAATGAGAACTACAGACTCCAAGAAGTTGATGGAGCTATCTACCTTGGATGGAAGAACAGGGCAATGGCAACCGCATCTGCATGGAGATGA 1626 45.69 MQASHNRQASSMIHEMDPYYLSRFHVLGNHVSSDASSQGNSVNFSSYKDQFFTLESFPATADLSGSNSPSAGSVLSSRSPFSPQGSQSCSSDQHHSFENTCGSPLSGCSVTDDDNDIKHKLKELEISLLGPESDMVDSCYCSFRGGAHQDASVARRNWNQVVEMIPKLNLQDTLIHCAQAIHDSDLNVATLFMDVLGQMVSVFGDPAQRVGAYLLEGLRARLERSGSAIYKALKCKEPTSSELMSYMSILFQICPYFKFGYTSANAVIWEAMVNEPIIHIIDFQIAQGSQYISLIQDLANRPGGPPALLRITGVDDSQSAHARGGGLQIVGQNLAQLAQSKGIPFQFHAAAMSGCDVEHSNLIIQPGEALAVNFPYTLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTIIEQESNTNTSPFLLRFIETLDYYTAMFESIDVARSRDDKQRIRAEQHCVARDIVNMVACEGFERVERHELLGKWRMRMRMAGFTLCPMSSSVTGAVRNMLRDFNENYRLQEVDGAIYLGWKNRAMATASAWR 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2785012 2788217 - MELO3C007444.2.1 Cme08g00456 334719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00456 541 PANTHER SCARECROW-LIKE PROTEIN 13 12 540 IPR030005 -
Cme08g00456 541 ProSiteProfiles GRAS family profile. 161 541 IPR005202 -
Cme08g00456 541 MobiDBLite consensus disorder prediction 63 93 - -
Cme08g00456 541 Pfam GRAS domain family 171 541 IPR005202 -
Cme08g00456 541 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 12 540 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00456 Cme-Chr8:2785012 Cme11g00929 Cme-Chr11:12896452 0 dispersed
Cme08g00456 Cme-Chr8:2785012 Cme04g02627 Cme-Chr4:32120122 2.40E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41765 PF03514 GRAS 1.60E-124 CL0063 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00456 - - csv:101207883 1049.65