Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00469 ATGATACCCTTTTTCCCATCTTCTTCAAATTCCTTTCTAACCTTCTTTTTCTTCTTTGTCTCTCTTACTTTTCTTTCCTTCTCTGTTTCCTCTGTAACTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCATGGTGATACCCAGAAGCTGGTTTCTTTTAAATCTTCACTTCCGAATCCATCCCTTCTTCAGAACTGGCTTTCCAATGCTGACCCATGTTCGTTTTCTGGTATTACTTGTAAGGAAACTAGAGTCTCTGCCATAGACTTGAGTTTCTTGTCTTTGAGCTCTAATTTCAGTCATGTGTTTCCTTTGCTTGCGGCTCTTGACCATTTGGAATCGCTTTCTCTTAAATCTACTAACCTCACTGGCTCCATTTCTTTGCCCTCTGGATTTAAGTGTAGTCCTCTGCTTTCTTCTGTAGATCTGTCTCTTAATGGCTTGTTTGGTTCTGTTTCTGATGTCTCCAACTTGGGGTTTTGCTCCAATGTTAAGTCGCTTAATCTGTCCTTTAACGCCTTTGATTTTCCTCTTAAAGACTCTGCTCCTGGATTGAAGCTTGATTTGCAGGTTCTTGATCTTTCTTCTAATCGGATTGTTGGGTCTAAATTAGTTCCGTGGATTTTCTCTGGTGGATGTGCTAATTTGCAGCACTTGGCATTGAAAGGAAACAAAATCAGCGGAGAGATTAATCTGTCGTCTTGTAATAAACTCGAGCATTTGGATATCTCTGGCAATAATTTCTCTGTGGGTATTCCGTCTTTGGGTGATTGCTCTGTTTTGGAACATTTTGATATCTCCGGCAATAAGTTCACCGGCGACGTTGGACATGCTCTGTCTTCTTGTCAGCAACTCACCTTTCTGAATCTCTCCAGTAACCAATTTGGTGGTCCAATCCCTTCATTTGCATCTTCAAATTTGTGGTTTCTTTCGCTTGCTAACAACCATTTCCAGGGGGAGATACCTGTAAGTATTGCAGATTTGTGTTCTAGTTTGGTAGAGCTTGATCTTTCTTCTAATAGTTTGATTGGAGCTGTACCTACTCCTTTGGGGTCTTGTTCTTCGTTGCAAACTTTAGACATTTCGAAAAATAATCTTACTGGTGAGCTCCCCATTGCCGTTTTTGCCAAAATGAGTAGTCTCAAGAAACTCTCTGTTTCAGACAATAAGTTTTCTGGGGTTTTGTCGGATTCTCTGTCTCAACTCGCCTTTTTGAATTCCTTGGATCTCAGTTCCAATAACTTTTCTGGGTCGATTCCGGCGGGGCTTTGCGAAGACCCTAGCAACAATTTGAAAGAACTGTTTCTTCAGAACAATTGGTTAACAGGTCGAATCCCGGCGAGTATTAGTAATTGTTCACAGCTGGTTTCTCTTGATTTGAGCTTCAACTTTCTTAGTGGGACGATCCCTTCCAGCTTGGGATCGCTTTCTAAGCTTAAGAACTTGATTATGTGGTTGAATCAGCTGGAGGGGGAGATTCCATCGGATTTTAGCAACTTTCAAGGGCTTGAGAATCTGATCCTGGATTTCAATGAGCTCACTGGGACCATCCCATCCGGGTTAAGCAACTGCACCAACTTGAACTGGATTTCATTGTCAAACAACCGGTTGAAAGGAGAGATTCCCGCTTGGATTGGGAGCTTACCGAACCTTGCCATCCTTAAGCTCAGCAACAACTCGTTTTATGGTAGGATTCCTCAGGAGCTCGGCGATTGCCGGAGCTTGATCTGGCTTGACTTGAATACCAATCTGTTGAACGGAACGATCCCTCCAGAGCTGTTTCGTCAATCCGGTAACATTGCCGTTAACTTTATCACGGGGAAATCTTATGCTTACATTAAGAATGATGGTAGTAAGCAGTGTCATGGAGCTGGAAATTTGCTTGAATTTGCTGGAATAAGACAGGAACAAGTGAGTAGAATTTCAAGCAAGAGTCCTTGCAATTTCACAAGGGTTTATAAGGGAATGACTCAGCCCACTTTTAATCATAATGGTTCCATGATCTTTCTTGATCTTTCCCACAATATGTTGTCTGGTAGTATTCCTAAGGAGATTGGTTCCACAAACTATCTCTACATTTTGGATTTGGGACATAACAGTCTTTCGGGACCAATTCCACAGGAGCTCGGCGACTTGACGAAACTTAACATTCTTGATCTGTCTAGCAATGAGCTTGAAGGATCAATTCCATTGTCTTTGACTGGACTTTCCTCCCTCATGGAGATTGATCTCTCCAACAATCATCTCAATGGTTCTATACCCGAATCAGCTCAGTTTGAAACATTCCCGGCATCAGGTTTTGCCAATAATTCTGGCCTTTGTGGGTATCCTCTTCCTCCATGTGTTGTTGATTCAGCAGGAAATGCAAATTCCCAGCATCAAAGATCTCATAGGAAACAGGCATCTCTTGCTGGGAGTGTTGCAATGGGGTTACTCTTCTCTCTTTTCTGTATTTTTGGTCTGATTATCGTCGTTATCGAGACGAGGAAGAGAAGGAAAAAGAAGGATTCTACTCTTGATTCTTATGTTGAGAGTCATTCCCAATCAGGCACGACCACAGCCGTCAACTGGAAATTAACTGGTGCCCGTGAAGCATTGAGCATCAATCTTGCAACATTCGAGAAGCCACTACGAAAGCTTACATTTGCTGATCTTCTTGAGGCTACAAATGGGTTCCACAACGATAGTATGATTGGTTCAGGGGGTTTCGGCGACGTATATAAGGCTCAATTGAAGGATGGAAGCACTGTAGCCATTAAGAAGCTGATTCATGTTAGTGGGCAGGGTGATAGAGAATTCACAGCAGAAATGGAAACCATTGGTAAAATCAAACACCGAAACCTAGTACCGCTTTTAGGCTACTGTAAAGTCGGAGAAGAACGGCTTCTGGTGTATGAGTATATGAAATATGGAAGCTTGGAAGACGTTTTACACGACCAGAAGAAGGGCGGGATCAAATTGAATTGGTCAGCAAGAAGAAAAATTGCCATTGGAGCTGCAAGGGGACTGGCTTTCCTTCACCACAATTGCATCCCTCACATCATTCACAGGGACATGAAATCAAGCAATGTCTTATTGGATGAGAATTTGGAAGCTAGAGTATCAGATTTTGGAATGGCAAGACTAATGAGTGCCATGGACACTCATTTGAGTGTAAGCACATTAGCTGGAACACCCGGTTACGTCCCTCCCGAATATTACCAAAGCTTCCGGTGTTCAACAAAAGGCGACGTTTACAGTTATGGTGTCGTCATGCTCGAGCTCTTAACAGGTAAACGACCTACAGACTCAGCAGATTTCGGGGACAACAATCTTGTAGGATGGGTAAAACAACACGTCAAGTTGGACCCCATCAATGTTTTTGATCCCGAACTCATAAAGGAGGATCCAAGCCTCAAGATAGAGCTTTTAGAACACTTGAAAGTAGCTGTTGCTTGTTTAGACGATAGGTCATGGCGGCGTCCAACAATGATCCAGGTAATGACGATGTTCAAGGAAATCCAAGCAGGGTCAGGGATGGATTCACACTCTACGATTGGAACCGACAACGGAGGATTCAGCGTCGAGATGGTAGATATGAGCTTAAAAGAAGTGCCAGAACCAGAAGGCAAGTAA 3615 42.82 MIPFFPSSSNSFLTFFFFFVSLTFLSFSVSSVTPSSSSSSSSSHGDTQKLVSFKSSLPNPSLLQNWLSNADPCSFSGITCKETRVSAIDLSFLSLSSNFSHVFPLLAALDHLESLSLKSTNLTGSISLPSGFKCSPLLSSVDLSLNGLFGSVSDVSNLGFCSNVKSLNLSFNAFDFPLKDSAPGLKLDLQVLDLSSNRIVGSKLVPWIFSGGCANLQHLALKGNKISGEINLSSCNKLEHLDISGNNFSVGIPSLGDCSVLEHFDISGNKFTGDVGHALSSCQQLTFLNLSSNQFGGPIPSFASSNLWFLSLANNHFQGEIPVSIADLCSSLVELDLSSNSLIGAVPTPLGSCSSLQTLDISKNNLTGELPIAVFAKMSSLKKLSVSDNKFSGVLSDSLSQLAFLNSLDLSSNNFSGSIPAGLCEDPSNNLKELFLQNNWLTGRIPASISNCSQLVSLDLSFNFLSGTIPSSLGSLSKLKNLIMWLNQLEGEIPSDFSNFQGLENLILDFNELTGTIPSGLSNCTNLNWISLSNNRLKGEIPAWIGSLPNLAILKLSNNSFYGRIPQELGDCRSLIWLDLNTNLLNGTIPPELFRQSGNIAVNFITGKSYAYIKNDGSKQCHGAGNLLEFAGIRQEQVSRISSKSPCNFTRVYKGMTQPTFNHNGSMIFLDLSHNMLSGSIPKEIGSTNYLYILDLGHNSLSGPIPQELGDLTKLNILDLSSNELEGSIPLSLTGLSSLMEIDLSNNHLNGSIPESAQFETFPASGFANNSGLCGYPLPPCVVDSAGNANSQHQRSHRKQASLAGSVAMGLLFSLFCIFGLIIVVIETRKRRKKKDSTLDSYVESHSQSGTTTAVNWKLTGAREALSINLATFEKPLRKLTFADLLEATNGFHNDSMIGSGGFGDVYKAQLKDGSTVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDQKKGGIKLNWSARRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVMLELLTGKRPTDSADFGDNNLVGWVKQHVKLDPINVFDPELIKEDPSLKIELLEHLKVAVACLDDRSWRRPTMIQVMTMFKEIQAGSGMDSHSTIGTDNGGFSVEMVDMSLKEVPEPEGK 1204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2878546 2882606 + MELO3C007457.2.1 Cme08g00469 334732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00469 1204 SUPERFAMILY L domain-like 659 777 - -
Cme08g00469 1204 SUPERFAMILY Protein kinase-like (PK-like) 878 1168 IPR011009 -
Cme08g00469 1204 Gene3D Transferase(Phosphotransferase) domain 1 968 1169 - -
Cme08g00469 1204 SMART serkin_6 892 1164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00469 1204 PRINTS Leucine-rich repeat signature 356 369 - -
Cme08g00469 1204 PRINTS Leucine-rich repeat signature 712 725 - -
Cme08g00469 1204 SUPERFAMILY RNI-like 278 592 - -
Cme08g00469 1204 ProSiteProfiles Protein kinase domain profile. 892 1179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00469 1204 Pfam Brassinosteroid receptor island domain 598 662 IPR045381 -
Cme08g00469 1204 Pfam Leucine Rich Repeat 237 254 IPR001611 GO:0005515
Cme08g00469 1204 Pfam Leucine Rich Repeat 430 452 IPR001611 GO:0005515
Cme08g00469 1204 Pfam Leucine Rich Repeat 455 476 IPR001611 GO:0005515
Cme08g00469 1204 SUPERFAMILY L domain-like 43 301 - -
Cme08g00469 1204 ProSitePatterns Protein kinases ATP-binding region signature. 898 921 IPR017441 GO:0005524
Cme08g00469 1204 Pfam Leucine rich repeat N-terminal domain 45 80 IPR013210 -
Cme08g00469 1204 Pfam Protein kinase domain 892 1161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00469 1204 CDD STKc_IRAK 898 1167 - -
Cme08g00469 1204 Gene3D Ribonuclease Inhibitor 50 781 IPR032675 -
Cme08g00469 1204 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1014 1026 IPR008271 GO:0004672|GO:0006468
Cme08g00469 1204 Pfam Leucine rich repeat 355 415 IPR001611 GO:0005515
Cme08g00469 1204 Pfam Leucine rich repeat 502 560 IPR001611 GO:0005515
Cme08g00469 1204 Pfam Leucine rich repeat 691 749 IPR001611 GO:0005515
Cme08g00469 1204 Gene3D - 603 663 - -
Cme08g00469 1204 PANTHER SYSTEMIN RECEPTOR SR160 21 1179 - -
Cme08g00469 1204 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 21 1179 - -
Cme08g00469 1204 SMART LRR_typ_2 712 735 IPR003591 -
Cme08g00469 1204 SMART LRR_typ_2 353 377 IPR003591 -
Cme08g00469 1204 SMART LRR_typ_2 500 524 IPR003591 -
Cme08g00469 1204 SMART LRR_typ_2 736 759 IPR003591 -
Cme08g00469 1204 SMART LRR_typ_2 573 596 IPR003591 -
Cme08g00469 1204 SMART LRR_typ_2 189 211 IPR003591 -
Cme08g00469 1204 SMART LRR_typ_2 548 572 IPR003591 -
Cme08g00469 1204 SMART LRR_typ_2 378 401 IPR003591 -
Cme08g00469 1204 SMART LRR_typ_2 402 426 IPR003591 -
Cme08g00469 1204 Gene3D Phosphorylase Kinase; domain 1 853 967 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01857 Cme-Chr2:25211219 Cme08g00469 Cme-Chr8:2878546 4.16E-153 dispersed
Cme08g00469 Cme-Chr8:2878546 Cme09g01287 Cme-Chr9:17788528 0 dispersed
Cme12g01094 Cme-Chr12:18866549 Cme08g00469 Cme-Chr8:2878546 1.44E-33 dispersed
Cme08g00469 Cme-Chr8:2878546 Cme05g00654 Cme-Chr5:7055603 9.30E-150 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65064 PF00069 Pkinase 6.90E-45 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00469 K13415 - csv:101209118 2253.4