Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00488 ATGGCTTCCATCGATTTTTCATCCATCCTTTTTGCATTTATTATAGCCTTTCTAATCTTCATCATTTTCTCTCGTATTTGGAGATGGGATTTCCATGGAATCATTCCTTGGAATTGGCCAATCGTTGGAATGACACCCACTGTTATTGCTCATTTCCACCGACCTCATGATCGTGTTACTGAAGTCTTACAACAAACTGCTTTCACTTTCTTCTTCAAAGGCATTTGGTTTTCAGGTACGGACTTCCTCTTCACAGTCGACCCTTCAAATATTCACCATATTTTGAGTGCCAATTTTGAGCGATATCCCAAAGGCCCTGATTTCAAGTACATATTTGAAGTTTTGGGAGATGGTATTTTCAATTCTGATTCTGATGTTTGGAAAAGTCAACGTAAAACGGCTCATCACTTGGTTCGCCATGAGAGTTTTCTTCAGTTCTTAGAGAAAATCACATTGAATAAAGTGAAAACAGGGCTTGTTCCTGTTCTTGACAGTGTTTGTGAAAATGGTTCAGTGTTGGATTTGCAAGATTTGTTTCAAAGATTCTCATTTGATTCAACTTGTATGATGGTTACTGGCTTTGATCTTCATAGTTTATCACTTGAATCCCCTGAAGTCCCTTTTTCCAAGGCTATGGATGATGCAGAGGAAGTGATTTTTCTCAGACACTTTTTCCCTAAAACAATATGGGAATTTCAAAAGAAACTCCAAATTGGTCAGCCCAAGAGACTAAAACAAGCTTGGGAAATCATAGATGAAACCATCGCTAAATTGATAGCCTCCAAAAGGAAAAGCTTGAAAAATCAAATGAAAGAAGAGGGTGGTGATGACAAAGAAGGAGTTGATCTGATCACATCATATATTACAAATATAGAATACGACGATGAATTCTTGAGGGACACCGTTCTGAATTTTATGATTGCAGGTAGAGATACATTAAGTTCGGCGCTCTCTTGGTTTTTCTTTTGTGTTTCGAACAATCCAACCGTCGTAGAAAAAATCAGAGAAGAGCTTAGAACATCGATTCCAACGAATGAAGCTTATGATCAAAGGCGGATATTTTCCCTTGAAGAGGTGGATAATTTGGTTTACTTGCATGGAACATTGTGCGAAGCTCTTAGACTATATCCTCCAGTCCCACTTCAACACAAGGTGTCTACACAACATGATATACTCCCAAGTGGTCATCACATAAAACCCAAAACAAAGATTTTGTTTTCATTATATGCATTGGGAAGAATGAGTGAAGTGTGGGGAAAAGATTGCTTGGAGTTTAAGCCAGAGAGATGGATTAATTCAGAAAATGGAAAGATCAAACATGTGCCATCTTACAAATTCTTGGCGTTCAATGCTGGGCCAAGAACATGCTTAGGAAAACATGTTGCTTTCACTGAATTGAAAATAGTAGCAGCTGCCATTATTCATAACTACAATATTATTCAACAAACAGGGCATGAGGTTGTTCCAAGTGCTTCTATTATTCTTCATATGAAGCATGGATTCAAGGTCAAAGTAACAAAGAGGTGGAGTACTTGA 1536 37.89 MASIDFSSILFAFIIAFLIFIIFSRIWRWDFHGIIPWNWPIVGMTPTVIAHFHRPHDRVTEVLQQTAFTFFFKGIWFSGTDFLFTVDPSNIHHILSANFERYPKGPDFKYIFEVLGDGIFNSDSDVWKSQRKTAHHLVRHESFLQFLEKITLNKVKTGLVPVLDSVCENGSVLDLQDLFQRFSFDSTCMMVTGFDLHSLSLESPEVPFSKAMDDAEEVIFLRHFFPKTIWEFQKKLQIGQPKRLKQAWEIIDETIAKLIASKRKSLKNQMKEEGGDDKEGVDLITSYITNIEYDDEFLRDTVLNFMIAGRDTLSSALSWFFFCVSNNPTVVEKIREELRTSIPTNEAYDQRRIFSLEEVDNLVYLHGTLCEALRLYPPVPLQHKVSTQHDILPSGHHIKPKTKILFSLYALGRMSEVWGKDCLEFKPERWINSENGKIKHVPSYKFLAFNAGPRTCLGKHVAFTELKIVAAAIIHNYNIIQQTGHEVVPSASIILHMKHGFKVKVTKRWST 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3010978 3012741 + MELO3C007480.2.1 Cme08g00488 334751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00488 511 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 449 458 IPR017972 GO:0005506|GO:0016705
Cme08g00488 511 PANTHER ALKANE HYDROXYLASE MAH1-LIKE 12 509 - -
Cme08g00488 511 PRINTS E-class P450 group I signature 297 314 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme08g00488 511 PRINTS E-class P450 group I signature 317 343 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme08g00488 511 PRINTS E-class P450 group I signature 366 384 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme08g00488 511 PRINTS E-class P450 group I signature 446 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme08g00488 511 PRINTS E-class P450 group I signature 456 479 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme08g00488 511 SUPERFAMILY Cytochrome P450 36 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme08g00488 511 Gene3D Cytochrome P450 34 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme08g00488 511 Pfam Cytochrome P450 38 501 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme08g00488 511 PANTHER CYTOCHROME P450 12 509 - -
Cme08g00488 511 PRINTS P450 superfamily signature 308 325 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme08g00488 511 PRINTS P450 superfamily signature 367 378 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme08g00488 511 PRINTS P450 superfamily signature 447 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme08g00488 511 PRINTS P450 superfamily signature 456 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00484 Cme-Chr8:2994027 Cme08g00488 Cme-Chr8:3010978 0 dispersed
Cme08g00488 Cme-Chr8:3010978 Cme08g00490 Cme-Chr8:3027202 0 dispersed
Cme08g00487 Cme-Chr8:3005269 Cme08g00488 Cme-Chr8:3010978 0 tandem
Cme08g00488 Cme-Chr8:3010978 Cme08g00489 Cme-Chr8:3017737 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00488 - - csv:101218649 975.311