Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00502 ATGGCGAATGAGTTTGGTGAATCGACAAGTATGCCACATCGGAACCCATCGTGCTCTACTAACAGTGATACTACTAATAATGATACTGGTGATTTTGAATGCAATATTTGCTTTGAGTTAGCTCAAGACCCAATTATTACTCTTTGTGGTCATCTCTTTTGCTGGCCTTGTTTATATAGATGGCTGCATCATCACTCACAATGTCAAGAATGTCCTGTTTGTAAGGCTCTTATTCAAGAGGAAAAGTTGGTTCCTCTTTATGGTAGGGGTAAAATACCATCTGATCCAAGATTAAATAGATATCCTGGTATTGATATTCCAAATCGTCCTGCCGGTCAAAGACCTCAAACAGCACCACCTCCTGTTCCTAATGATTTTGCAAACTATGGATTTGGATTCACTGGTGGCTTTATGCCAATGGCATCAGCAAGAATTGGCAATTTCACTTTAGCTACTGCTTTTGGTGGTCTGATCCCATCTTTATTCAATATCCAGTTTCATGGATTTCCCGATGCTACAGTTTATGGAACTACTTCTGGTTACCCTTATGCATTCAACACCTTTCATGGAGGTCATGGTCACCATTTTCCGCAACCGTCCACTCGAGGTCAGCATGCTGATAACGTACTGAAAAACCTTCTTTTACTTGTTGGTGTCTTTGTAATTCTTGCCTTGCTCTGGTGGTAA 687 40.76 MANEFGESTSMPHRNPSCSTNSDTTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHHHSQCQECPVCKALIQEEKLVPLYGRGKIPSDPRLNRYPGIDIPNRPAGQRPQTAPPPVPNDFANYGFGFTGGFMPMASARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSGYPYAFNTFHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWW 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3101352 3102736 + MELO3C007493.2.1 Cme08g00502 334765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00502 228 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Cme08g00502 228 MobiDBLite consensus disorder prediction 98 120 - -
Cme08g00502 228 ProSiteProfiles Zinc finger RING-type profile. 34 75 IPR001841 -
Cme08g00502 228 PANTHER RING ZINC FINGER PROTEIN-RELATED 2 227 - -
Cme08g00502 228 CDD RING-HC_AtRMA_like 32 76 - -
Cme08g00502 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 91 IPR013083 -
Cme08g00502 228 SMART ring_2 34 74 IPR001841 -
Cme08g00502 228 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 227 IPR045103 GO:0005783|GO:0006511|GO:0061630
Cme08g00502 228 Pfam Zinc finger, C3HC4 type (RING finger) 33 74 - -
Cme08g00502 228 MobiDBLite consensus disorder prediction 1 23 - -
Cme08g00502 228 SUPERFAMILY RING/U-box 29 87 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02252 Cme-Chr4:29595967 Cme08g00502 Cme-Chr8:3101352 1.30E-26 dispersed
Cme06g01884 Cme-Chr6:22326503 Cme08g00502 Cme-Chr8:3101352 3.52E-06 dispersed
Cme08g00502 Cme-Chr8:3101352 Cme11g01195 Cme-Chr11:18091813 2.53E-24 dispersed
Cme10g01277 Cme-Chr10:13660314 Cme08g00502 Cme-Chr8:3101352 3.22E-06 transposed
Cme03g01984 Cme-Chr3:27660739 Cme08g00502 Cme-Chr8:3101352 1.01E-92 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00502 K10666 - csv:101205026 450.284