Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00510 ATGGGAATCGCAAAAGGTCCATTAATTTTGTCCAATAAGGCAACTAGTTGTGCCAATTCTTCTATGTCCCACGATTATCATCATCAAGGAATCTTCACCTTCTCTAATGCCACCTTTGACAAATCCAATCCCTCCTCCCTCCCCGCCCAACACATCCGCCCTGACAAGCTCCGTCTTGAATCTTTCTCCGACTCCATCCCCCCGCCACCATCCCACCTCGTCGGAATAGACGAACACCATCACCAACAACAACTTCATCATGTCTATGCCTCCCCATCTAGTGGGGGGACCATGTTATCCGACATGTTCAATTTCCCTCCCACTACTCCCTCCGCCGCGGCTACTACGGTCGACTTCTCCGACAATTTCCGAACTTTACGCCCCCCCAACTCGGCCTCGGCCATGCAACTTTTCTTGATGAACCCTCCTCCACCACCACAAGCGCAACCACGATCCCCTTCGCCACCCTCGACTTCCTCCACTCTCCACATGCTCCTCCCGAACCCACCTGCGAACCCTCTCCAGGGTTTCGAAGGTGGGGTTGGCGTCGGAGACCAAACGACGGCTTTTGGGCAATTCGCTGTCGTCGAAAGTCAAGGTCTTTCACTCTCACTTCACTCCTCTTCCTTACAACACTTGGAGGACGGTGCTGTTGCGAAAGCGGATGAATTACGAATTAGGGATGGTGGGATTTTGTATAATTATAACAACAACAATCAAGTCCATGGTGATGGAGGAAGTGGATCAACATCCTCAATTTTGCAATATTCTTTTAGGAATAATGAGAATTCTCCTCATAGCTTTCAAGCTAATTCACAAATAATGAATAATCCCAATAACCATCAAGTTCAAATTGGATTTGGGTCATCTTTAGGAGTTGTCAATGTGTTGAGGAATTCAAAATATGTCAAACCTGCACAAGAATTGCTTGAGGAGTTTTGCAGTGTTGGGAAAGTTCAATTGAAGAAAAACAAGTTCAATATTAAACCAAACCCCAATACTGAATCCGCTACCACCGCCACTACTTCCGCCGCCGCTACCGGTGGCTCGACATCAAAAGATCAACCTCCCTTATCGGCTGCTGACAGAATTGAACATCAACGGAGAAAGGTCAAACTATTGTCCATGCTTGATGAGGTGGAACGCAGATATAACTTATATCGAGAGCAAATGCAAATGGTGGTCAACTCGTTCGACCTAGTGATGGGGTTCGGGGCAGCAGCGCCGTACACGACGTTGACACAGAAGGCAATGTCGAGGCACTTTCGGTGCTTGAAAGACGCAATAGCGGAGCAGTTAAAGCAGAGCTACGAGGCGTTGGGGGAGAAAGGAGGGAACGGAGGGTCTGGAATAACGAAAGGAGAGACACCAAGATTGAAACTTCTTGAACAAAGCCTTAGGCAACAAAGGGCTTTCCATCAAATGGGGATGATGGAACAAGAAGCTTGGAGACCACAGCGTGGTCTTCCTGAACGATCTGTCAACATTCTCAGAGCTTGGCTTTTCGAGCATTTTCTTCATCCGTACCCCAGCGACGCAGACAAGCTTCTGTTAGCTCGACAGACTGGTTTGTCCAGAAATCAGGTTTCAAATTGGTTCATTAATGCAAGAGTTCGGTTGTGGAAACCTATGGTGGAAGAAATGTACCAACTTGAAGGCAAAGTCGATACAGATCAACAATCACAGGAGGATACCCCACAAAATAACAACAACAACAACAACAATAATAATAAAACACAAAACAATGCCATTACAAATCCACAAAATCCAACCACCGCAGCCGTGGAAGAAGTAGCAGCGGAGTTCGCGGCGGGGCATGACTACTCCGATTTGCATGATGTGTGGCGACACGGAAGTAGTGGATCAGATCATCATCAACAACATTATGGGACCATGTCTGAGGATGTTACTGCGGCGGCTGACATGAATCCTGGACCAACACTTATACGATTTGGGACCACGAACACGGCCACCGGTGACGTGTCCCTCACGTTAGGCCTCCGCCATGCCGGAAACACCTCCGCCGCCGCTGCCGTGGATAATCCTTCTTTCTCTCTACGTGACTTTGGTCAGTCTTAA 2079 48.05 MGIAKGPLILSNKATSCANSSMSHDYHHQGIFTFSNATFDKSNPSSLPAQHIRPDKLRLESFSDSIPPPPSHLVGIDEHHHQQQLHHVYASPSSGGTMLSDMFNFPPTTPSAAATTVDFSDNFRTLRPPNSASAMQLFLMNPPPPPQAQPRSPSPPSTSSTLHMLLPNPPANPLQGFEGGVGVGDQTTAFGQFAVVESQGLSLSLHSSSLQHLEDGAVAKADELRIRDGGILYNYNNNNQVHGDGGSGSTSSILQYSFRNNENSPHSFQANSQIMNNPNNHQVQIGFGSSLGVVNVLRNSKYVKPAQELLEEFCSVGKVQLKKNKFNIKPNPNTESATTATTSAAATGGSTSKDQPPLSAADRIEHQRRKVKLLSMLDEVERRYNLYREQMQMVVNSFDLVMGFGAAAPYTTLTQKAMSRHFRCLKDAIAEQLKQSYEALGEKGGNGGSGITKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKLLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQLEGKVDTDQQSQEDTPQNNNNNNNNNNKTQNNAITNPQNPTTAAVEEVAAEFAAGHDYSDLHDVWRHGSSGSDHHQQHYGTMSEDVTAAADMNPGPTLIRFGTTNTATGDVSLTLGLRHAGNTSAAAAVDNPSFSLRDFGQS 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3146484 3152461 + MELO3C007500.2.1 Cme08g00510 334773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00510 692 Coils Coil 370 397 - -
Cme08g00510 692 SUPERFAMILY Homeodomain-like 484 551 IPR009057 -
Cme08g00510 692 MobiDBLite consensus disorder prediction 326 362 - -
Cme08g00510 692 MobiDBLite consensus disorder prediction 560 589 - -
Cme08g00510 692 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 74 675 - -
Cme08g00510 692 SMART HOX_1 483 547 IPR001356 GO:0003677
Cme08g00510 692 MobiDBLite consensus disorder prediction 326 357 - -
Cme08g00510 692 Pfam Homeobox KN domain 500 539 IPR008422 GO:0003677|GO:0006355
Cme08g00510 692 MobiDBLite consensus disorder prediction 139 153 - -
Cme08g00510 692 Gene3D - 486 548 - -
Cme08g00510 692 MobiDBLite consensus disorder prediction 135 164 - -
Cme08g00510 692 Pfam Associated with HOX 296 430 IPR006563 -
Cme08g00510 692 MobiDBLite consensus disorder prediction 555 589 - -
Cme08g00510 692 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 74 675 - -
Cme08g00510 692 CDD homeodomain 483 544 IPR001356 GO:0003677
Cme08g00510 692 ProSiteProfiles 'Homeobox' domain profile. 480 543 IPR001356 GO:0003677
Cme08g00510 692 SMART prehox3 291 431 IPR006563 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00510 Cme-Chr8:3146484 Cme11g00313 Cme-Chr11:3310166 2.94E-161 dispersed
Cme08g00510 Cme-Chr8:3146484 Cme04g02323 Cme-Chr4:30173085 1.37E-83 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41770 PF07526 POX 5.60E-49 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00510 - - csv:101202767 1191.02