Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00521 AGAATAAGAGAAGAAGAAGAAGAAGCTCTCTCTTTCAATTTCACGGTTCGTTCTTTCTTTTTCTCAGCTTTCCTTTTCCATTTTCCATCTAAATCAATCAACAAAGCCTTGCGACTCGGGTTGTTCTTTAGAACAATTTTAGGGATCAAATTTTTCTTTGATTTAAACCTAATCTATAAATTTTCATCTGATATCGACTTGAATGATCGTGTCGACCTCTTCTCTCACCAGCTTCCAAGTGTGATCAACAGAGCATTTACTCCCATTGAAGAGCGAGGTCAGAGGGAGGGAGGGGATGATTCTTTTTGTTGTTTGTTCAGTTGGAGTAAGTTGCAGTCAACTATGACTTTGCATCGAAACTATTTGATCGTTGTAATCGCAATTTTCTCGGCTTCTTTAACAATCGCCGAGGGGTTAACGTCCTGCGAAACCGGTAATTCGGTTCAATTTTTACGCCATCCGTTTGGATTCACAGACGTGAAACCAATCAAATTGAATTGCAGCGAAAATGGCGAGATTCAAATCGGCAGATTCCAGGTTCAGAACATTAATGAAAGAAGTATCCTCATCAAACTTCCTACAGGGTGCAATATCCCTATCAATTCACTCTCAGAACTGTCCAGCAAAAACTACAAGCCCACCCTCCGCAACAGTCTCTTCCTGAATTGTACCGAACAACCACTTCCATGCGGAGTCATGGGGAATTTCACCCTGAATCAGCCGACGGACTGCGGCTTTAAGAGTAATAATATCAGCTGTTTCACCAAGACCGAGCAAAATGGATTTCTGCCTCCTTTAAATAAGTGCCACTCCCTTTTGTCCTCTGTATTCGTTAATTTTACGTCAAATTCGACCACTCTGTTCGAGGTCGAGTTTGGGGTCATTGAGTTAGAGTGGTGGGTCTCACCTTCGTCTGCCGCTCAATGCTCAAAATATGCCAATCGAGAGAACATTACCAGCTCGAAGGAGAACCTAGGATTTCGTTGTCAGTGCATAGAAGGGTTTGAAGGAAATGCTTATGACAACGTCGGCGGCGGCTGCCGGAAAGTTTCTCACAAATGCAACCCTCCAACGTACATAACTGGGCGATGTGGTGGGGAAAGCAAAGTCGCTGCCCTAATTGCAGGTGTCTTTGTAGGGGCGTTTCTAATGGCTGTCTTGACCCTTATCTGTTACTGCATCCGACGCCGCTCAATGTGTCTTAAAGGTCAGATGAGTGCAAAGCGGCTTCTAAGTGAGGCTGCCGGAAATTCCAGTGTTACTTTATACCCCTACAAAGAAATAGAAAGAGCCACTAATGGCTTCTCTGAGAAACAACGTCTGGGAACTGGAGCCTTTGGTACAGTCTATGCCGGAAGGCTTCACGAGGATGAGTGGGTTGCTGTAAAGAGGATCAAATACAGAGACCACAACAGCATTGACCAGGTTATGAATGAGATAAAACTCCTTTCCTCGGTGAGCCACCCAAATTTGGTCCGCTTGCTTGGCTGCTGCATTGAGGAAGGCCAACAGATCCTTGTATACGAGTTTATGCCCAATGGAACTCTCTCTCAACATCTTCAGAGAGAGCGTGGAAATGGACTCCCATGGACAACACGGCTCACTATAGCAGCCGAAACTTCTCGTGCAATAGCATACCTTCATTCTTCTGTGCACCCACCAATATATCACAGAGACATCAAATCGAGCAATATACTTCTGGATCATGGTTTCAAATCAAAAGTTGCAGATTTTGGTCTTTCTAGACTTGGTATGACAGAAATATCTCACATCTCAACAGCTCCCCAAGGAACCCCAGGCTACGTTGATCCACAATACCATCAAAATTTTTATCTTTCTGACAAAAGTGACGTATATAGTTTTGGAGTAGTCCTAGTAGAGATAATAACAGCATTGAAAGTGGTTGATTTCACTCGTCCCCAAAGTGAAGTAAACTTAGCTGCACTTGCCATTGATAGGATTGGTAGAAACTCTGTGGATGAACTAATCGATCCTTTCCTCGAGCCACATAGAGATGCTTGGACCCTCTACTCTATTCACAAGGTGGCTGAGCTTGCATTCAGATGCCTTGCTTTCCACAGCGACATGAGGCCTTCGATGACAGAAGTAGCAGAGGAATTGGAAAGCATCAGACGCAGTGGATGGACATCAATGGAGGAGCATTTTTGTGCAGCATCATCAGCAGGATCAGCTTGTTCATCTCCTCGTAGTGTAAGCGAGAGATCCATAAGTAGTAGCATAACAATTAAGAAGACCGGGCTGCTTGCAGGACTGGGGAGCCAGAGATTGATAATCCCACCGGAGAACAACCATAGTAAGGACTATCTACCTCCTGTTGAGGAGGTTATGGATAGTTCCCCAGTTTCAATACAGGATCCTTGGTTAAGTGAACAAAGCTCGCCTTCAACAAATAGTTTATTGGGTAATGTAGCACGGTGA 2439 44.28 RIREEEEEALSFNFTVRSFFFSAFLFHFPSKSINKALRLGLFFRTILGIKFFFDLNLIYKFSSDIDLNDRVDLFSHQLPSVINRAFTPIEERGQREGGDDSFCCLFSWSKLQSTMTLHRNYLIVVIAIFSASLTIAEGLTSCETGNSVQFLRHPFGFTDVKPIKLNCSENGEIQIGRFQVQNINERSILIKLPTGCNIPINSLSELSSKNYKPTLRNSLFLNCTEQPLPCGVMGNFTLNQPTDCGFKSNNISCFTKTEQNGFLPPLNKCHSLLSSVFVNFTSNSTTLFEVEFGVIELEWWVSPSSAAQCSKYANRENITSSKENLGFRCQCIEGFEGNAYDNVGGGCRKVSHKCNPPTYITGRCGGESKVAALIAGVFVGAFLMAVLTLICYCIRRRSMCLKGQMSAKRLLSEAAGNSSVTLYPYKEIERATNGFSEKQRLGTGAFGTVYAGRLHEDEWVAVKRIKYRDHNSIDQVMNEIKLLSSVSHPNLVRLLGCCIEEGQQILVYEFMPNGTLSQHLQRERGNGLPWTTRLTIAAETSRAIAYLHSSVHPPIYHRDIKSSNILLDHGFKSKVADFGLSRLGMTEISHISTAPQGTPGYVDPQYHQNFYLSDKSDVYSFGVVLVEIITALKVVDFTRPQSEVNLAALAIDRIGRNSVDELIDPFLEPHRDAWTLYSIHKVAELAFRCLAFHSDMRPSMTEVAEELESIRRSGWTSMEEHFCAASSAGSACSSPRSVSERSISSSITIKKTGLLAGLGSQRLIIPPENNHSKDYLPPVEEVMDSSPVSIQDPWLSEQSSPSTNSLLGNVAR 812
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3232224 3236824 - MELO3C007511.2.1 Cme08g00521 334784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00521 812 MobiDBLite consensus disorder prediction 786 812 - -
Cme08g00521 812 Pfam Protein tyrosine and serine/threonine kinase 438 707 IPR001245 GO:0004672|GO:0006468
Cme08g00521 812 SMART serkin_6 435 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00521 812 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 14 132 747 - -
Cme08g00521 812 MobiDBLite consensus disorder prediction 789 812 - -
Cme08g00521 812 Gene3D Phosphorylase Kinase; domain 1 386 510 - -
Cme08g00521 812 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 132 747 IPR045274 GO:0007166
Cme08g00521 812 ProSitePatterns Protein kinases ATP-binding region signature. 441 463 IPR017441 GO:0005524
Cme08g00521 812 ProSitePatterns Serine/Threonine protein kinases active-site signature. 555 567 IPR008271 GO:0004672|GO:0006468
Cme08g00521 812 SUPERFAMILY Protein kinase-like (PK-like) 415 708 IPR011009 -
Cme08g00521 812 Gene3D Transferase(Phosphotransferase) domain 1 511 727 - -
Cme08g00521 812 ProSiteProfiles Protein kinase domain profile. 435 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00521 Cme-Chr8:3232224 Cme04g02455 Cme-Chr4:31119687 2.37E-88 dispersed
Cme12g01864 Cme-Chr12:24879168 Cme08g00521 Cme-Chr8:3232224 1.66E-82 dispersed
Cme03g00184 Cme-Chr3:2239235 Cme08g00521 Cme-Chr8:3232224 4.37E-93 transposed
Cme08g02430 Cme-Chr8:31201131 Cme08g00521 Cme-Chr8:3232224 1.76E-88 transposed
Cme11g02309 Cme-Chr11:30156612 Cme08g00521 Cme-Chr8:3232224 2.38E-43 transposed
Cme03g01991 Cme-Chr3:27689823 Cme08g00521 Cme-Chr8:3232224 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65068 PF07714 PK_Tyr_Ser-Thr 1.90E-44 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00521 - - csv:101222324 1320.84