Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00551 ATGGCTCCAGTAGGAAATCAAGGTTGGTCTGCACCTGAGCTGCCAAATTTCCCTTGTGTGGCTCCAGTTGGAAATCACGTCTGGTCTGCACCTGAGCTGCCATCCTCGGCAATGATGCGGGGGATTCCTCCCGCATTCTTTGATTGCTCTACTCTTAGTACTGAGAGTTCTCCCATGCATAGCCCAAGAGGTAAAAGTCCCCACCGAGATCCCAGAAGTCCAACAGGACCTACATCTCCATTGCACGCCAAGATTTCCCATGAAACACATGCTGTGCGCCGCGAGGGTTCTGGTCATGTCAGTGTCCACCCTTTGCCTCTTCCTCCTGGAGTGCCAATGCCTTCAGCGTCAATCCCAACAATGGCTTCAGCACCAACCTCCGTCACTCTATCATCACCCCCTGTGTCTTCACCATCAATTTCAATACCTTCAGCATCATGCTCGATGGCTCTACCGTCAACCCCAATGGCATCACCATCAACCCCAATTTCACAAGCTAACATTAAGAGTGAGTCAATCTCAATGAAAAATCAATGGCAGAAAGGAAAGCTTATTGGTCGGGGCACATTTGGAAGTGTATATGTTGCTAGCAACAGAGAAAATGGTGCTTTATGTGCAATGAAGGAAGTTGAACTATTTCACGACGATCCAAAGTCAGCTGAATCTATAAAGCAATTAGAGCAGGAGATCAAACTTCTGAGCCAGCTAAAGCATCCAAATATTGTTCAATACTATGGTAGTGATATTATTGACGATCGATTATATATATACCTGGAGTATGTTCATCCTGGTTCAATTAATAAATATGTTCGTGAACATTGCGGAGCTATGACAGAATCTGTTGTTCGAAATTTTACTCGACACATCCTCTCAGGGTTGGCCTACTTGCACAGCACAAAGACAATACACAGGGACATTAAAGGTGCTAATTTGCTGGTAGATTCTTGTGGGGTTGTCAAGCTTGCTGACTTTGGAATGGCTAAACACCTTACAGGACAAGTTGCCGATCTCTCTTTAAAGGGAAGTCCATATTGGATGGCTCCTGAGCTCCTCCTGTCTGTGATGCAGAAAGATAACAGCCCTGATCTAGCCCTAGCAGTTGATATTTGGAGCCTTGGTTGCACTATTATAGAAATGTTCACTGGCAAACCACCTTGGAGTGAGTATGAAGGGGCTGCAGCTATGTTTAAAGTCATGAAAGATACTCCACCAATGCCGGAATCATTGTCATACGAAGCAAGAGATTTCTTAAAATGTTGCTTTCAAAGAAATCCTGCAGAGAGGCCGACCGCTGCCATGCTGCTTGAACATCCGTTCATGAAAAACTTGCAGTATCCAGATGCTTCATCTTGCTCTCAGGTTGTTGCTGGAGCAAGTTTGATGGATAAATGTTATAGCCCAAGTAAACAATATTCAAGTAAATCCGATCAATCTTCCATGCTTCCAAGCCCACAAAATTCCAAGGGAAAGTTAGCGGCCGAGAGTGTGATTGGCCCACTATCTCATCATGAAACCTCTGACTTAACAGTAATGTCTCGCTATTCCCCCCGTTCTACCCTTGAAGCTCTTCCAATACTGTCTCCTCTGCGCTCAGTTCCCAATGCGCATCATCTCGATGGGAGGCAAGGAAAGTGCTCGAGGCCAGGCTTGCCCTCAGCTTTGCTCGTATCTCCAGTCGACGAGCGTTTAGCAGGGGTGGTAAAATATCGGGGGAAAAATCAGCTTCATAAGGAGAAGCCAGATTCAGATGCTGCATCTAGTGGAGCTTCAGTAATGGCGACATCCACTGATCATTCTTTGGTGTTGGCGTGGGAAAAATCACCACTTCCATTGTGTTCCATATGGTACAACTTCAAACTGAATTTGTAG 1869 45.64 MAPVGNQGWSAPELPNFPCVAPVGNHVWSAPELPSSAMMRGIPPAFFDCSTLSTESSPMHSPRGKSPHRDPRSPTGPTSPLHAKISHETHAVRREGSGHVSVHPLPLPPGVPMPSASIPTMASAPTSVTLSSPPVSSPSISIPSASCSMALPSTPMASPSTPISQANIKSESISMKNQWQKGKLIGRGTFGSVYVASNRENGALCAMKEVELFHDDPKSAESIKQLEQEIKLLSQLKHPNIVQYYGSDIIDDRLYIYLEYVHPGSINKYVREHCGAMTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSCGVVKLADFGMAKHLTGQVADLSLKGSPYWMAPELLLSVMQKDNSPDLALAVDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVMKDTPPMPESLSYEARDFLKCCFQRNPAERPTAAMLLEHPFMKNLQYPDASSCSQVVAGASLMDKCYSPSKQYSSKSDQSSMLPSPQNSKGKLAAESVIGPLSHHETSDLTVMSRYSPRSTLEALPILSPLRSVPNAHHLDGRQGKCSRPGLPSALLVSPVDERLAGVVKYRGKNQLHKEKPDSDAASSGASVMATSTDHSLVLAWEKSPLPLCSIWYNFKLNL 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3459611 3465551 + MELO3C007543.2.1 Cme08g00551 334814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00551 622 MobiDBLite consensus disorder prediction 469 492 - -
Cme08g00551 622 SMART serkin_6 179 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00551 622 ProSiteProfiles Protein kinase domain profile. 179 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00551 622 MobiDBLite consensus disorder prediction 469 490 - -
Cme08g00551 622 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 5 20 530 - -
Cme08g00551 622 Pfam Protein kinase domain 180 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00551 622 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 20 530 - -
Cme08g00551 622 ProSitePatterns Protein kinases ATP-binding region signature. 185 208 IPR017441 GO:0005524
Cme08g00551 622 MobiDBLite consensus disorder prediction 50 84 - -
Cme08g00551 622 SUPERFAMILY Protein kinase-like (PK-like) 164 484 IPR011009 -
Cme08g00551 622 Gene3D Transferase(Phosphotransferase) domain 1 175 479 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00551 Cme-Chr8:3459611 Cme09g00855 Cme-Chr9:11355542 3.69E-73 dispersed
Cme10g00015 Cme-Chr10:168996 Cme08g00551 Cme-Chr8:3459611 2.43E-14 dispersed
Cme04g01582 Cme-Chr4:23117579 Cme08g00551 Cme-Chr8:3459611 8.40E-42 transposed
Cme05g00263 Cme-Chr5:1916073 Cme08g00551 Cme-Chr8:3459611 1.29E-74 transposed
Cme05g01657 Cme-Chr5:25692530 Cme08g00551 Cme-Chr8:3459611 9.22E-75 transposed
Cme06g01017 Cme-Chr6:7319721 Cme08g00551 Cme-Chr8:3459611 2.56E-113 transposed
Cme08g00999 Cme-Chr8:6511085 Cme08g00551 Cme-Chr8:3459611 9.26E-16 transposed
Cme08g01088 Cme-Chr8:7195247 Cme08g00551 Cme-Chr8:3459611 9.27E-111 transposed
Cme09g01564 Cme-Chr9:20609817 Cme08g00551 Cme-Chr8:3459611 2.35E-117 transposed
Cme03g02003 Cme-Chr3:27752940 Cme08g00551 Cme-Chr8:3459611 5.48E-175 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65069 PF00069 Pkinase 1.30E-68 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00551 - - cmo:103484760 1030.39