Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00553 ATGAAGGATAACTCCTCCAAATATGTTGTTTTCTTGGTTATAAGCTTCTTTTTCTTGAATCATCTCCTTGTATCCTCACAACTTGATTATAGGTTCTATGATGCCTCTTGTCCCAATCTAACAAGGATTGTCAGATATGGCGTCTGGATGGCAGTTTCTAATGATACTAGGATGGCTGCTTCTCTCTTACGACTTCATTTTCATGACTGCTTTGTCAACGGCTGTGATGGATCATTGTTGCTTGACGACACTAACACATTTAAGGGGGAGAAAAATGCATTGCCGAATGTGAACTCAGTTCGAGGCTATGAAGTTATTGATAATATAAAGGCTGTCTTAGAGAAAGTCTGCCCATGTGTTGTCTCATGTACTGATATAGTAACTCTAGCAGCTAGAGAAGCTGTCTACCTGGCTGGGGGACCATTTTGGCAAATTCCACTTGGTCGTCGAGACGGCACGACAGCAAGCGAGAGTGAAGCCAATCAGCTGCCATCACCACTGGAGCCATTGGAGAATATCATTGCGAAATTCACTTCGAAAGGCCTCAATGTGAAGGATCTTGTTGCTCTCTCAGGGGGACACACTTTCGGATTTGCTCGGTGTATGATGTTCAAGCATAGGCTGTTCAACTTTGACGGCGCTGGAAATCCCGATCCAGAACTCGATGTCATGCTGCGACAGAATTTAGAGAACAACTGTCCAAATCAAGATGACTCCAACAACAATTTCGCCCCCTTAGATGCATACACGATCAACCGGTTCGACAATGTGTATTATAGGAACTTGGTGAACAAGTTGGGACTTCTGCAGTCAGACCAAGCTCTCATGAAAGACAATACAACTGCTTCTTTGGTGGTGAACTACAGCAGGTATCCATATCTGTTTTACAGGGATTTTGGAGCATCAATGGTGAAGCTGGCCAATACTGGGATCCTTACAGGCCAAAAAGGGGAGATTAGGAAGAATTGCAGGATGGTGAACTAG 984 44.0 MKDNSSKYVVFLVISFFFLNHLLVSSQLDYRFYDASCPNLTRIVRYGVWMAVSNDTRMAASLLRLHFHDCFVNGCDGSLLLDDTNTFKGEKNALPNVNSVRGYEVIDNIKAVLEKVCPCVVSCTDIVTLAAREAVYLAGGPFWQIPLGRRDGTTASESEANQLPSPLEPLENIIAKFTSKGLNVKDLVALSGGHTFGFARCMMFKHRLFNFDGAGNPDPELDVMLRQNLENNCPNQDDSNNNFAPLDAYTINRFDNVYYRNLVNKLGLLQSDQALMKDNTTASLVVNYSRYPYLFYRDFGASMVKLANTGILTGQKGEIRKNCRMVN 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3469424 3471046 + MELO3C007545.2.1 Cme08g00553 334816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00553 327 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme08g00553 327 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme08g00553 327 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme08g00553 327 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme08g00553 327 PRINTS Haem peroxidase superfamily signature 247 262 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme08g00553 327 PANTHER PEROXIDASE 72-RELATED 14 326 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme08g00553 327 CDD secretory_peroxidase 27 326 IPR033905 GO:0004601|GO:0042744
Cme08g00553 327 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601
Cme08g00553 327 Gene3D - 31 327 - -
Cme08g00553 327 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme08g00553 327 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme08g00553 327 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme08g00553 327 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme08g00553 327 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme08g00553 327 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme08g00553 327 PRINTS Plant peroxidase signature 245 260 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme08g00553 327 PRINTS Plant peroxidase signature 261 278 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme08g00553 327 PRINTS Plant peroxidase signature 301 314 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme08g00553 327 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Cme08g00553 327 Pfam Peroxidase 49 290 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme08g00553 327 ProSiteProfiles Plant heme peroxidase family profile. 27 327 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme08g00553 327 Gene3D Peroxidase, domain 2 164 306 - -
Cme08g00553 327 PANTHER PEROXIDASE 14 326 - -
Cme08g00553 327 SUPERFAMILY Heme-dependent peroxidases 27 327 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00100 Cme-Chr5:631104 Cme08g00553 Cme-Chr8:3469424 2.80E-115 dispersed
Cme08g00553 Cme-Chr8:3469424 Cme03g01035 Cme-Chr3:19575862 2.91E-115 dispersed
Cme03g01528 Cme-Chr3:24448350 Cme08g00553 Cme-Chr8:3469424 5.61E-89 transposed
Cme07g01772 Cme-Chr7:23269540 Cme08g00553 Cme-Chr8:3469424 1.46E-65 transposed
Cme11g01656 Cme-Chr11:24439891 Cme08g00553 Cme-Chr8:3469424 3.08E-86 transposed
Cme11g02446 Cme-Chr11:31195476 Cme08g00553 Cme-Chr8:3469424 7.56E-65 transposed
Cme12g01555 Cme-Chr12:22973936 Cme08g00553 Cme-Chr8:3469424 9.03E-87 transposed
Cme11g00509 Cme-Chr11:5199458 Cme08g00553 Cme-Chr8:3469424 6.63E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00553 K00430 - csv:101218459 630.943