Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00568 ATGGCACAAAGATCGCTCCCCGCTCCGTTTCTCACCAAGACCTATCAGCTGGTGGATGATCCTGCCACCGACGACGTCGTTTCATGGAATCAATCTGGCTCTACCTTCATCGTATGGAAAACCGCTGATTTCGCCAGAGATTTGCTTCCCAATTACTTCAAACATAATAATTTCTCTAGCTTCGTCCGTCAGCTTAATACATACGGTTTTCGCAAGATCGTACCGGACAAATGGGAATTCGCCAACGACAATTTCCAACGGGGCCACAGAGAGCTCCTCTCCAAAATCCGCCGCCGGAAGGCCGTCTTGATATCGACACCCATGCAAACTGTTCATCCCGTTAAATCCGGCGGCGGTGGCGGCAACCCTTCTCCCTCCAACTCCGGGGAGGACATCGGATCCACTTCCACCTCCAATCCGGGATCGGTGGAGATGGGAACCATCGCACAATTCGCCGATCTGACTGAGGAGAACGACAAATTAAGGAAAGATAACGAGATGTTGAACTCGGAGCTTGTTCAGACGAAGAAACAGTGTGACGAGCTGGTAGCTTTCCTGACGGACTACTTGAAGGTAGCGCCGGATCAGATCAACCGGATCATGAAACAAGAAGCTAACAATCGCGTTGCCAGTCAATGTAGCGAGGGAGGCGCTGATAACGGTAGGATCGAGGAGGAGGAAGAAGAGGAGGAGGAAGAAGAAGAAGCAGAAGAAGAAGAGGGCGAAACTCTGAAACTGTTTGGGGTTTGGTTGAAAGGGAAAAAGGAAAAGAAGATGAAAAGGGGACGAGAGGAGAAAATGGGGTGCAGCAACGGACCACATGCGAAAGCAATGAAGTCGGTTGAGATGCACGCGCCGTTGATGAGGAGCAACTGA 876 50.8 MAQRSLPAPFLTKTYQLVDDPATDDVVSWNQSGSTFIVWKTADFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANDNFQRGHRELLSKIRRRKAVLISTPMQTVHPVKSGGGGGNPSPSNSGEDIGSTSTSNPGSVEMGTIAQFADLTEENDKLRKDNEMLNSELVQTKKQCDELVAFLTDYLKVAPDQINRIMKQEANNRVASQCSEGGADNGRIEEEEEEEEEEEEAEEEEGETLKLFGVWLKGKKEKKMKRGREEKMGCSNGPHAKAMKSVEMHAPLMRSN 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3586724 3589581 - MELO3C007560.2.1 Cme08g00568 334831

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00568 291 Gene3D - 2 100 IPR036388 -
Cme08g00568 291 Coils Coil 220 244 - -
Cme08g00568 291 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cme08g00568 291 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 285 IPR027725 -
Cme08g00568 291 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cme08g00568 291 MobiDBLite consensus disorder prediction 221 241 - -
Cme08g00568 291 Coils Coil 151 178 - -
Cme08g00568 291 MobiDBLite consensus disorder prediction 107 143 - -
Cme08g00568 291 MobiDBLite consensus disorder prediction 207 245 - -
Cme08g00568 291 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cme08g00568 291 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cme08g00568 291 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cme08g00568 291 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cme08g00568 291 MobiDBLite consensus disorder prediction 257 291 - -
Cme08g00568 291 MobiDBLite consensus disorder prediction 120 143 - -
Cme08g00568 291 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 2 285 - -
Cme08g00568 291 SUPERFAMILY Winged helix DNA-binding domain 7 99 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00568 K09419 HSFF; heat shock transcription factor, other eukaryote - csv:101216801 484.567
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00568 Cme-Chr8:3586724 Cme08g01634 Cme-Chr8:17059288 1.34E-48 dispersed
Cme08g00568 Cme-Chr8:3586724 Cme09g01727 Cme-Chr9:21878183 1.31E-64 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g1074 . . Bda04g00268 . . . . . Cmo03g00995 Cmo07g00722 . . . . Sed14g0845 Cpe19g00618 . Bhi03g01845 Tan03g1538 Cmetu08g0700 . Hepe04g1245 . . Cla01g01646 Cam01g1727 Cec04g1370 Cco04g1439 Clacu01g1752 Cmu01g1632 Cre04g1306 Cone6ag1394 Cone9ag1322 . . Lsi01g00978 Csa06g02938 . Cme08g00568 . . . . . . . . . . . Cma03g00981 Cma07g00708 Car03g00881 Car07g00700 Cpe10g00435 . Bhi10g02300 . . . . . . . . . . . . . . . Chy02g00913 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme06g00575 . 36 259 HSF AT4G17750 56.8 5.0e-62 235.7
Cme03g02164 . 46 246 HSF AT4G17750 52.7 1.5e-58 224.2
Cme05g02050 . 57 249 HSF AT4G17750 50.7 5.0e-46 182.6
Cme11g01528 . 7 114 HSF AT4G17750 65.7 7.1e-40 162.2
Cme03g02056 . 20 118 HSF AT4G17750 71.7 6.0e-39 159.1
Cme07g00343 . 20 118 HSF AT4G17750 69.7 2.3e-38 157.1
Cme09g01727 CCT 20 115 HSF AT4G17750 69.8 1.6e-36 151.0
Cme06g02455 . 21 517 HSF AT5G16820 50.9 8.2e-102 367.9
Cme06g00575 . 37 241 HSF AT5G16820 57.0 1.7e-59 227.3
Cme03g02164 . 47 246 HSF AT5G16820 53.1 6.8e-56 215.3
Cme11g01528 . 13 115 HSF AT5G16820 70.9 3.8e-38 156.4
Cme06g02455 . 13 514 HSF AT1G32330 53.8 1.4e-122 436.8
Cme06g00575 . 25 226 HSF AT1G32330 53.5 3.0e-59 226.5
Cme03g02164 . 35 227 HSF AT1G32330 54.1 6.8e-56 215.3
Cme11g01528 . 8 118 HSF AT1G32330 67.0 1.1e-40 164.9
Cme03g02056 . 20 117 HSF AT1G32330 71.4 3.8e-38 156.4
Cme06g00575 . 37 240 HSF AT3G02990 56.7 2.0e-60 230.3
Cme03g02164 . 47 246 HSF AT3G02990 51.7 6.6e-56 215.3
Cme11g01528 . 13 106 HSF AT3G02990 72.3 4.8e-38 156.0
Cme06g00575 . 14 291 HSF AT2G26150 50.2 5.6e-68 255.0
Cme06g02455 . 8 243 HSF AT2G26150 55.7 5.1e-61 231.9
Cme12g01263 CCT,ECH 5 155 HSF AT2G26150 53.3 5.8e-41 165.2
Cme11g01528 . 5 118 HSF AT2G26150 61.4 1.3e-37 154.1
Cme04g02434 . 115 357 HSF AT5G03720 56.7 4.9e-71 265.4
Cme11g01528 . 3 137 HSF AT4G18880 63.0 9.1e-46 181.4
Cme06g00359 . 3 460 HSF AT4G13980 52.3 6.7e-117 417.9
Cme11g01528 . 4 137 HSF AT4G13980 58.2 1.3e-38 157.9
Cme06g00575 . 25 217 HSF AT5G43840 53.9 1.1e-53 207.2
Cme06g00575 . 14 325 HSF AT3G22830 53.1 3.0e-89 325.9
Cme03g02164 . 35 257 HSF AT3G22830 52.4 1.3e-63 240.7
Cme06g02455 . 29 242 HSF AT3G22830 58.9 8.3e-63 238.0
Cme03g02164 . 35 227 HSF AT3G51910 56.5 9.5e-55 210.7
Cme06g00575 . 14 226 HSF AT3G63350 50.9 4.9e-54 208.4
Cme03g02164 . 35 234 HSF AT3G63350 52.7 6.6e-51 198.0
Cme11g01528 . 2 139 HSF AT3G63350 55.1 1.6e-36 150.2
Cme08g00568 . 2 291 HSF AT4G36990 52.0 3.2e-69 258.8
Cme09g01727 CCT 12 299 HSF AT5G62020 50.3 2.4e-59 226.1
Cme09g01727 CCT 16 335 HSF AT4G11660 55.5 2.8e-81 299.3
Cme07g00343 . 16 119 HSF AT4G11660 74.0 1.2e-44 177.6
Cme03g02056 . 16 121 HSF AT4G11660 71.7 1.6e-44 177.2
Cme08g00568 . 2 100 HSF AT4G11660 72.7 5.7e-42 168.7
Cme04g02057 . 24 117 HSF AT4G11660 73.4 9.5e-37 151.4
Cme06g02455 . 33 126 HSF AT4G11660 69.1 1.6e-36 150.6
Cme08g01634 . 39 204 HSF AT2G41690 54.8 1.4e-44 176.8
Cme03g02056 . 19 374 HSF AT1G46264 51.8 2.4e-87 319.3
Cme07g00343 . 19 325 HSF AT1G46264 55.2 1.5e-84 310.1
Cme02g00771 . 18 206 HSF AT1G46264 53.2 7.6e-49 191.4
Cme06g02455 . 33 138 HSF AT1G46264 73.6 3.4e-41 166.0
Cme11g01528 . 5 105 HSF AT1G46264 67.3 3.9e-37 152.5
Cme02g01348 CCT 59 340 HSF AT3G24520 50.2 1.2e-64 243.8
Cme06g00575 . 36 259 HSF AT4G17750 56.8 5.0e-62 235.7
Cme03g02164 . 46 246 HSF AT4G17750 52.7 1.5e-58 224.2
Cme05g02050 . 57 249 HSF AT4G17750 50.7 5.0e-46 182.6
Cme11g01528 . 7 114 HSF AT4G17750 65.7 7.1e-40 162.2
Cme03g02056 . 20 118 HSF AT4G17750 71.7 6.0e-39 159.1
Cme07g00343 . 20 118 HSF AT4G17750 69.7 2.3e-38 157.1
Cme09g01727 CCT 20 115 HSF AT4G17750 69.8 1.6e-36 151.0
Cme06g02455 . 21 517 HSF AT5G16820 50.9 8.2e-102 367.9
Cme06g00575 . 37 241 HSF AT5G16820 57.0 1.7e-59 227.3
Cme03g02164 . 47 246 HSF AT5G16820 53.1 6.8e-56 215.3
Cme11g01528 . 13 115 HSF AT5G16820 70.9 3.8e-38 156.4
Cme06g02455 . 13 514 HSF AT1G32330 53.8 1.4e-122 436.8
Cme06g00575 . 25 226 HSF AT1G32330 53.5 3.0e-59 226.5
Cme03g02164 . 35 227 HSF AT1G32330 54.1 6.8e-56 215.3
Cme11g01528 . 8 118 HSF AT1G32330 67.0 1.1e-40 164.9
Cme03g02056 . 20 117 HSF AT1G32330 71.4 3.8e-38 156.4
Cme06g00575 . 37 240 HSF AT3G02990 56.7 2.0e-60 230.3
Cme03g02164 . 47 246 HSF AT3G02990 51.7 6.6e-56 215.3
Cme11g01528 . 13 106 HSF AT3G02990 72.3 4.8e-38 156.0
Cme06g00575 . 14 291 HSF AT2G26150 50.2 5.6e-68 255.0
Cme06g02455 . 8 243 HSF AT2G26150 55.7 5.1e-61 231.9
Cme12g01263 CCT,ECH 5 155 HSF AT2G26150 53.3 5.8e-41 165.2
Cme11g01528 . 5 118 HSF AT2G26150 61.4 1.3e-37 154.1
Cme04g02434 . 115 357 HSF AT5G03720 56.7 4.9e-71 265.4
Cme11g01528 . 3 137 HSF AT4G18880 63.0 9.1e-46 181.4
Cme06g00359 . 3 460 HSF AT4G13980 52.3 6.7e-117 417.9
Cme11g01528 . 4 137 HSF AT4G13980 58.2 1.3e-38 157.9
Cme06g00575 . 25 217 HSF AT5G43840 53.9 1.1e-53 207.2
Cme06g00575 . 14 325 HSF AT3G22830 53.1 3.0e-89 325.9
Cme03g02164 . 35 257 HSF AT3G22830 52.4 1.3e-63 240.7
Cme06g02455 . 29 242 HSF AT3G22830 58.9 8.3e-63 238.0
Cme03g02164 . 35 227 HSF AT3G51910 56.5 9.5e-55 210.7
Cme06g00575 . 14 226 HSF AT3G63350 50.9 4.9e-54 208.4
Cme03g02164 . 35 234 HSF AT3G63350 52.7 6.6e-51 198.0
Cme11g01528 . 2 139 HSF AT3G63350 55.1 1.6e-36 150.2
Cme08g00568 . 2 291 HSF AT4G36990 52.0 3.2e-69 258.8
Cme09g01727 CCT 12 299 HSF AT5G62020 50.3 2.4e-59 226.1
Cme09g01727 CCT 16 335 HSF AT4G11660 55.5 2.8e-81 299.3
Cme07g00343 . 16 119 HSF AT4G11660 74.0 1.2e-44 177.6
Cme03g02056 . 16 121 HSF AT4G11660 71.7 1.6e-44 177.2
Cme08g00568 . 2 100 HSF AT4G11660 72.7 5.7e-42 168.7
Cme04g02057 . 24 117 HSF AT4G11660 73.4 9.5e-37 151.4
Cme06g02455 . 33 126 HSF AT4G11660 69.1 1.6e-36 150.6
Cme08g01634 . 39 204 HSF AT2G41690 54.8 1.4e-44 176.8
Cme03g02056 . 19 374 HSF AT1G46264 51.8 2.4e-87 319.3
Cme07g00343 . 19 325 HSF AT1G46264 55.2 1.5e-84 310.1
Cme02g00771 . 18 206 HSF AT1G46264 53.2 7.6e-49 191.4
Cme06g02455 . 33 138 HSF AT1G46264 73.6 3.4e-41 166.0
Cme11g01528 . 5 105 HSF AT1G46264 67.3 3.9e-37 152.5
Cme02g01348 CCT 59 340 HSF AT3G24520 50.2 1.2e-64 243.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007234 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41781 PF00447 HSF_DNA-bind 2.50E-32 CL0123 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g00568 Cme_Chr08 FPKM 20.63863 23.443039 34.549755 37.306053 34.982891 25.582422 34.224812 9.086532 8.91284 8.863571