Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00577 TCACTTACCACTTTTCCTTTTCTCCATTCTTCTCTTCTTCCACCCACAATCCGCCGACGCTTTTTTTTTTTTAATTCTAATTTCTACCCAACCATGGATTGGGTTCGAGGACATGAGATTGGACATGGAAGTTTCGCTACCATCAATTTGGCCACGCCTTCTTCAGGTGATCGATTTCCTCCCTTAATGGCCGTTAAATCCTCTGAACTTGTTTGCTCTTCCTCGCTCAAGAACGAGAAGCAAATTTTGGATCTTCTTGGTGATGATTGCCCACAAATTATTCGGTGTTTCGGGGAGAGTTGTAGTGTCGAGAACGGCGAGGAGCTTTACAATCTGTTTCTCGAGTATGCTACTGGTGGGAGTTTAGCCGATAGAATACAGAGCTGCGGTGGTCGGCTGCCGGAATTTGAGGTTCGACGGTACACGAGGACTATTCTTGAAGGGCTTCGGTATATTCATGGAAAGGGGTTTGTTCACTGCGATGTTAAGCCTAGGAATATTCTCGTGTTTGGTGACGGCGATGCAAAGATTGCCGATTTCGGATTGTCGAAGAAGGCGGGAAAGAACAGGGTAGAAACAGGGGAAGAGACAGGGAGATTTCAATTGAGAGGCTCTCCTCTGTACATGTCGCCGGAATCGCTTAACGATAATGAGTATGAGTCGCCGTGTGACATATGGGCCGTCGGATGCGCGGTGGTGGAGATGTTCACAGGGAAGCCCGCGTGGAATTGTCGGCCGGAATCCAACGTGTTTGCTTTGTTAATCAAAATTGGGATTGGAGAAGAATTGCCGGAAATCCCTAAAGATCTATCGGAAGAAGGGAAAGACTTTCTCAGAAAATGTTTGGTGAAGGATCCAGTAAAGAGATGGACGGCCGATATGCTTCTAAAACACCCGTTCGTAGCAGACTCCGGGAGGTGTGTTCCATTGGGGGAAATGGACGAAGTATCGACGTCGCCAAGATGTCCTTTCGATTTCGAAGATTGGGCATCGATTCATTCACAAGAGAGGGATCCTAGAAATGAAGAGGAATCAAATTGTTGGTTGAATTCGTCGTGTTCGTGGTCGTCGTCTTCTCCAAGGGAGAGGCTGCTTCAACTAGTGGAGAAAGGGGCAGTTGACTGGTCGGTCACTGACAATTGGGTCAGGGTCAGATGA 1158 47.5 SLTTFPFLHSSLLPPTIRRRFFFFNSNFYPTMDWVRGHEIGHGSFATINLATPSSGDRFPPLMAVKSSELVCSSSLKNEKQILDLLGDDCPQIIRCFGESCSVENGEELYNLFLEYATGGSLADRIQSCGGRLPEFEVRRYTRTILEGLRYIHGKGFVHCDVKPRNILVFGDGDAKIADFGLSKKAGKNRVETGEETGRFQLRGSPLYMSPESLNDNEYESPCDIWAVGCAVVEMFTGKPAWNCRPESNVFALLIKIGIGEELPEIPKDLSEEGKDFLRKCLVKDPVKRWTADMLLKHPFVADSGRCVPLGEMDEVSTSPRCPFDFEDWASIHSQERDPRNEEESNCWLNSSCSWSSSSPRERLLQLVEKGAVDWSVTDNWVRVR 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3655913 3657159 + MELO3C007565.2.1 Cme08g00577 334840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00577 385 Gene3D Phosphorylase Kinase; domain 1 29 123 - -
Cme08g00577 385 ProSitePatterns Protein kinases ATP-binding region signature. 40 66 IPR017441 GO:0005524
Cme08g00577 385 Gene3D Transferase(Phosphotransferase) domain 1 124 346 - -
Cme08g00577 385 SMART serkin_6 34 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00577 385 CDD STKc_MAPKKK 33 301 - -
Cme08g00577 385 SUPERFAMILY Protein kinase-like (PK-like) 22 328 IPR011009 -
Cme08g00577 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Cme08g00577 385 Pfam Protein kinase domain 36 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00577 385 ProSiteProfiles Protein kinase domain profile. 34 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00577 385 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 32 351 - -
Cme08g00577 385 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 32 351 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00435 Cme-Chr1:3147153 Cme08g00577 Cme-Chr8:3655913 1.30E-71 dispersed
Cme08g00419 Cme-Chr8:2548921 Cme08g00577 Cme-Chr8:3655913 7.57E-70 dispersed
Cme08g00577 Cme-Chr8:3655913 Cme11g00827 Cme-Chr11:10812050 2.16E-71 dispersed
Cme01g00206 Cme-Chr1:1486724 Cme08g00577 Cme-Chr8:3655913 1.32E-57 transposed
Cme01g02014 Cme-Chr1:28698605 Cme08g00577 Cme-Chr8:3655913 2.56E-64 transposed
Cme01g02192 Cme-Chr1:30766079 Cme08g00577 Cme-Chr8:3655913 1.35E-26 transposed
Cme01g02532 Cme-Chr1:33287824 Cme08g00577 Cme-Chr8:3655913 8.02E-67 transposed
Cme04g01934 Cme-Chr4:27030465 Cme08g00577 Cme-Chr8:3655913 1.64E-54 transposed
Cme04g01997 Cme-Chr4:27570620 Cme08g00577 Cme-Chr8:3655913 1.49E-24 transposed
Cme12g01262 Cme-Chr12:20717183 Cme08g00577 Cme-Chr8:3655913 1.96E-22 transposed
Cme11g00336 Cme-Chr11:3494281 Cme08g00577 Cme-Chr8:3655913 1.43E-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65071 PF00069 Pkinase 1.10E-52 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00577 - - csv:105435904 639.802