Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00578 ATGTCGGTGGTGCTCGCCAAGACCGACTCGGAGGTGAGCAGTCTGACCCCGTCGTCGCCGACACGCTCCCCCAGCTCTCGCCGCCCAGTTTACTATGTGCAGAGCCCGTCCCGTGATTCGCACGATGGAGAAAAGACTACCAACTCCTTCCATTCGAGCCCTGTTCTGAGCCCAATGGGGTCCCCCCCTCATTCCCATTCCAACTCTTCCTTGGGCCCCCACTCACGTGACTCCTCCTCCACCCGATTCTCCGCCTCCGTCAAGCCCGGATCTCGCAAGCCCGCCAATCACAAGATTCCCAAGCCTTGGAAGCGATTCGACGCCATTGAAGAAGAGCGCCTCCTCGATGACGACGGCTCCTCCGACGGCTTCACCCGCCGTTGCTACTTCCTTGCTTTTGTTATTAGTTTTGTGCTTCTTTTCTCTCTGTTTTCTCTCATTTTATGGGGTGCCAGCCGGCCTCAGAAACCTACCATTCTAATGAAAAGCATTTTGTTTGACAAGTTCGTGATCCAAGCGGGGGCAGATTTTTCAGGGGTGGCCACCGGGTTGGTGACGATGAATGCGACGGTGAAGTTCATATTTAGAAATACGGCGACGTTTTTCGGAGTTCAAGTTACTTCCACTCCACTTCAGCTTTCGTATTCCCAGCTTACGCTCGCATCTGGAACAATGCAAAAGTTCCACCAGAGGAGGAAGAGTCAACGGGGTATAACAGTAATGGTAAAAGGAAGCGGCATTCCGCTGTACGGCGGCGGAGCCAGCCTAGGTAGCGTGAATGGAAAACCGGTGGAACCGGTCCCAATGAACCTTCAATTTACTGTCCGGTCGAGAGCCAACGTGTTGGGAAAACTGGTGAAGCCCAAATTCTATAAGAGCGTCGATTGCAGCGTGCTGATGGACCCTACCAATATGAACAAGCCCATTTCTCTCAAGAACAAATGCACATACCGATCATCAGCTTAG 966 53.0 MSVVLAKTDSEVSSLTPSSPTRSPSSRRPVYYVQSPSRDSHDGEKTTNSFHSSPVLSPMGSPPHSHSNSSLGPHSRDSSSTRFSASVKPGSRKPANHKIPKPWKRFDAIEEERLLDDDGSSDGFTRRCYFLAFVISFVLLFSLFSLILWGASRPQKPTILMKSILFDKFVIQAGADFSGVATGLVTMNATVKFIFRNTATFFGVQVTSTPLQLSYSQLTLASGTMQKFHQRRKSQRGITVMVKGSGIPLYGGGASLGSVNGKPVEPVPMNLQFTVRSRANVLGKLVKPKFYKSVDCSVLMDPTNMNKPISLKNKCTYRSSA 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3659664 3661904 - MELO3C007566.2.1 Cme08g00578 334841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00578 321 MobiDBLite consensus disorder prediction 47 87 - -
Cme08g00578 321 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 68 317 - -
Cme08g00578 321 MobiDBLite consensus disorder prediction 1 33 - -
Cme08g00578 321 MobiDBLite consensus disorder prediction 1 100 - -
Cme08g00578 321 Pfam Late embryogenesis abundant protein 196 291 IPR004864 -
Cme08g00578 321 PANTHER PROTEIN, PUTATIVE-RELATED 68 317 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme08g00578 Cme11g00387 CCT
Cme08g00578 Cme11g00387 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01646 Cme-Chr4:23740442 Cme08g00578 Cme-Chr8:3659664 2.28E-10 dispersed
Cme03g02057 Cme-Chr3:28063619 Cme08g00578 Cme-Chr8:3659664 4.30E-115 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00578 - - csv:105435905 574.318