Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00582 ATGTCTGATCACAAATCAGGCTCAATGGCCGATCAGCTCTCCAAGCAGACCTCTATTTTTGGTCTACGCTTGTGGGTTGTTCTTGGGGTTTGTGTTGGAGCAGCTTTTGTGCTCTTCCTCTTTCTAATTTCTCTTTGGATTGCTTCAAAACGCTCTCGCAAGAAGATTTCTAACAGACCCACCATTCCAATCGTCTCTAAAGAAATCCAAGAGATCAGAATCGATCATCCCCTCCCTCAAAACCAAGAACATAATAAGCCCAGTAGGTCCCATTTTCAGGTCGACCCACTTCCGGAGCCGGAACCAATTCCGGGAATTGAGCGTCAAGCGTTGCTTTCGTTGCCTCAGGAGGAGGAGCGAGTGAATAGGATTCATATTGAGATCGGGAAGGATCATAGGATTTCGTTTCCTGAGCGCCTTGGTCGGTCTTCTTCCTCGCAGGGTAGTGGAGAGGGGCGATGTGGTGGTGATCAGTTGCCTATGGTGGTGCCTGAAGTTTCGCATTTGGGTTGGGGGCATTGGTACACTCTCAGAGAGCTCGAAGCCTCGACTAATGGGTTCTCCCCAGATAATGTAATTGGTGAGGGTGGGTATGGAATTGTTTACCATGGCATATTGGAGGATGGAACTCAGGTTGCTGTGAAGAATTTGCTAAATAATAGGGGACAAGCCGAGAAGGAGTTCAAAGTTGAAGTTGAAGCAATTGGACGAGTCAGACACAAGAGCTTAGTTAGATTGCTTGGATACTGTGCTGAAGGTGCTCATAGGATGCTTGTATATGAGTATATAAATAATGGAAACTTGGAACAATGGCTTCATGGGGATGTTGGATCTTTCAGCCCTCTTACCTGGGAGATTAGAATGAATATCATTCTTGGAACGGCTAAAGGGCTAGCTTACCTCCACGAGGGATTAGAACCAAAAGTTGTTCACCGGGATATCAAATCAAGCAATATCCTACTCGATAAGCAATGGAATTCCAAGGTTTCAGATTTTGGCCTTGCAAAGCTACTGTGCTCTGACAATAGTTATATTACAACCCGAGTTATGGGAACATTTGGTTATGTTGCACCAGAATATGCGAGTACAGGAATGCTGAATGAAAGAAGTGATGTGTATAGTTTTGGAATACTTGTTATGGAAATAATATCAGGACGGAACCCTGTCGATTATAGTCGTCCTCCAGATGAGGTGAACTTGATCGATTGGCTTAAGAGAATGGTTAGTAACCGTAATCCAGAGGGCGTATTGGATCCAAAGCTTGCTGAAAAGCCTACTACAAGAGCATTAAAGCGGGCTCTTCTTGTTGCATTACGCTGTGTGGACCCAAATGCTCAGAAACGGCCAAAAATGGGACATATTATTCATATGCTAGAAGCTGAAGATGCTAACTTTAAAGGGGATCGTAAAGGTGGAAAAGACCCAGAGAATTCACATTCAAACAATGTCAATAATGGTTTAAACGAAAGGCAGGCGACAGAATTAGGTGGCAAAAATGTGGACGAACTCACTACTCGACAACGAGATATGTGA 1533 44.29 MSDHKSGSMADQLSKQTSIFGLRLWVVLGVCVGAAFVLFLFLISLWIASKRSRKKISNRPTIPIVSKEIQEIRIDHPLPQNQEHNKPSRSHFQVDPLPEPEPIPGIERQALLSLPQEEERVNRIHIEIGKDHRISFPERLGRSSSSQGSGEGRCGGDQLPMVVPEVSHLGWGHWYTLRELEASTNGFSPDNVIGEGGYGIVYHGILEDGTQVAVKNLLNNRGQAEKEFKVEVEAIGRVRHKSLVRLLGYCAEGAHRMLVYEYINNGNLEQWLHGDVGSFSPLTWEIRMNIILGTAKGLAYLHEGLEPKVVHRDIKSSNILLDKQWNSKVSDFGLAKLLCSDNSYITTRVMGTFGYVAPEYASTGMLNERSDVYSFGILVMEIISGRNPVDYSRPPDEVNLIDWLKRMVSNRNPEGVLDPKLAEKPTTRALKRALLVALRCVDPNAQKRPKMGHIIHMLEAEDANFKGDRKGGKDPENSHSNNVNNGLNERQATELGGKNVDELTTRQRDM 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3680046 3683494 - MELO3C007569.2.1 Cme08g00582 334845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00582 510 Pfam Protein kinase domain 190 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00582 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
Cme08g00582 510 ProSitePatterns Protein kinases ATP-binding region signature. 193 215 IPR017441 GO:0005524
Cme08g00582 510 SUPERFAMILY Protein kinase-like (PK-like) 168 459 IPR011009 -
Cme08g00582 510 CDD STKc_IRAK 193 459 - -
Cme08g00582 510 MobiDBLite consensus disorder prediction 77 99 - -
Cme08g00582 510 Gene3D Transferase(Phosphotransferase) domain 1 263 471 - -
Cme08g00582 510 ProSiteProfiles Protein kinase domain profile. 187 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00582 510 MobiDBLite consensus disorder prediction 465 510 - -
Cme08g00582 510 PANTHER RECEPTOR-LIKE KINASE PLANT 1 500 - -
Cme08g00582 510 PANTHER OS01G0323000 PROTEIN 1 500 - -
Cme08g00582 510 SMART serkin_6 187 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00582 510 MobiDBLite consensus disorder prediction 477 492 - -
Cme08g00582 510 Gene3D Phosphorylase Kinase; domain 1 168 262 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01426 Cme-Chr1:18142257 Cme08g00582 Cme-Chr8:3680046 1.30E-169 dispersed
Cme06g00160 Cme-Chr6:982691 Cme08g00582 Cme-Chr8:3680046 2.16E-154 dispersed
Cme08g00582 Cme-Chr8:3680046 Cme11g01574 Cme-Chr11:23333440 8.64E-177 dispersed
Cme03g02062 Cme-Chr3:28105142 Cme08g00582 Cme-Chr8:3680046 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65072 PF00069 Pkinase 5.50E-46 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00582 - - csv:101214966 979.933