Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00583 ATGGACCATTCTATTCCCAACAACTGCGATCGAAATGCATGTACTTCTTCGACGTGGACTCTCCCCGCCGCCGCCACCGCCGTCTCTTCCTCTTCCCCTCCCGACGATATCTCTCTGTTTCTTCAACAGATTATGCGGCGTTCCTCTTCCTCTGCTCCTCACTTCTCTCTCCTCTCTCCCTCTCCCTCCATCTTCTCCGAGCTCACCTGCAACATTAGAGCCTTCACCCCCCCAACCCATAACATTCCCCCTCCATACGGACAGCTCAATGCAGTGCCGGATGAGATCTCTGCCGTCGATTCTTCAGAACAATTTGCAAATTCCCCGTCATCCGGAGTATTACATGATCCCTTGCGCCCTTGTCCCACATCCATTCCACCCAACGCATCTTCTACGTCGGTTGGAGCTAGTGATCATAACGAAAACGATGAATTTGACTGCGAAAGCGAGGAGGGTCTGGAGGCATTGGTTGAAGAGCTGCCTACAAAGCCCAATCCTCGCAGCTCTTCCAAGAGAAGCAGAGCCGCTGAAGTTCATAATTTGTCTGAAAAGAGAAGGAGGAGCAGAATTAATGAGAAAATGAAAGCTCTGCAAAATCTGATCCCCAATTCTAACAAGACTGACAAGGCCTCGATGCTAGACGAAGCAATTGAATACCTGAAGCAGCTTCAACTTCAAGTTCAGATGCTGTCGATGAGAAATGGCTTGAGTTTGCATCCTATGAACTCGCCTGGAAGTTTGCAATATCTCCAACTTTCCCACATGAGAATGGATTTTGGTGAAGAAAACAGGTCAATTTCTTCTGACCAAGATAGACCTAACCAGATCTTTCTCAGTTTGCCTGACCAAAAGACTGCCCCCATCCATCCTTTCATGTCAGACATTGGAAGAACTAATGCAGCTGAAACTCCATTTGATTTGGTCCCGCCCATCCAGGCTCACCTAGTCCCTTTTTACCTGAGTGAGTCCTCCAAGTCTAAGGAGGACTGCAGCAGGGATTTACTGCGAGATGATCACCAGGCGGTGAATGTGAATGTGAGCCAATCGGAGAGAACTCCCTTAGCGTCATGCCCCTATAACATACCAGAGACTCCTGATTTACAAGGATTACAGAATGGCGTCTCAGTGGAACCATGCATCATTGAAAGAAATCGGTCTGATGTGCTTCTAAATTACACCCCAGAGCACAGCCTCGTATACCCTTCCCCTTTTAATGGGTAA 1221 48.24 MDHSIPNNCDRNACTSSTWTLPAAATAVSSSSPPDDISLFLQQIMRRSSSSAPHFSLLSPSPSIFSELTCNIRAFTPPTHNIPPPYGQLNAVPDEISAVDSSEQFANSPSSGVLHDPLRPCPTSIPPNASSTSVGASDHNENDEFDCESEEGLEALVEELPTKPNPRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMNSPGSLQYLQLSHMRMDFGEENRSISSDQDRPNQIFLSLPDQKTAPIHPFMSDIGRTNAAETPFDLVPPIQAHLVPFYLSESSKSKEDCSRDLLRDDHQAVNVNVSQSERTPLASCPYNIPETPDLQGLQNGVSVEPCIIERNRSDVLLNYTPEHSLVYPSPFNG 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3686402 3689010 - MELO3C007570.2.1 Cme08g00583 334846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00583 406 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 174 223 IPR011598 GO:0046983
Cme08g00583 406 MobiDBLite consensus disorder prediction 170 186 - -
Cme08g00583 406 Pfam Helix-loop-helix DNA-binding domain 178 224 IPR011598 GO:0046983
Cme08g00583 406 PANTHER TRANSCRIPTION FACTOR SPATULA 30 345 - -
Cme08g00583 406 MobiDBLite consensus disorder prediction 160 186 - -
Cme08g00583 406 CDD bHLH_AtPIF_like 174 236 - -
Cme08g00583 406 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 234 IPR036638 GO:0046983
Cme08g00583 406 Coils Coil 213 233 - -
Cme08g00583 406 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 30 345 IPR031066 -
Cme08g00583 406 MobiDBLite consensus disorder prediction 121 147 - -
Cme08g00583 406 Gene3D - 169 233 IPR036638 GO:0046983
Cme08g00583 406 SMART finulus 180 229 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00705 Cme-Chr7:6114688 Cme08g00583 Cme-Chr8:3686402 9.00E-30 dispersed
Cme08g00583 Cme-Chr8:3686402 Cme12g01961 Cme-Chr12:25490076 3.25E-26 dispersed
Cme01g00605 Cme-Chr1:4929996 Cme08g00583 Cme-Chr8:3686402 2.09E-32 transposed
Cme05g00357 Cme-Chr5:2842270 Cme08g00583 Cme-Chr8:3686402 6.86E-07 transposed
Cme03g02063 Cme-Chr3:28110755 Cme08g00583 Cme-Chr8:3686402 1.66E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41782 PF00010 HLH 4.80E-14 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00583 - - csv:101217594 718.383