Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00585 ATGTGGGATCTGAACGATTGGCCTGATGTAAGGGAGGAGGATGAATGTTCCTCCGCCAAGACATCCATTGAAGGTGAAGGAGATGAGGAAAAAGGGAAAAGAGTGGGATCGCTTTCCAATTCAAGCTCTTCTGCTGTGGTTATGGAAGAAGAGGAGGTGGAAGTCGAAGGTGGTTCCGATGAAGAGGAACCCACCCCCATGGTTACTCGCCAGTTTTTCCCACTCGAAGAAACTGAAATCCCAACTCCCCTTCCACATGCTTCTACCACTTCTGCCCCTCCCGCTGCCGCTGCCGCCTTCCCTCGGGCTCACTGGGTTGGGGTCAAATTTGCCCATCCCGATCCTCTCGCCGCTCTTCCTAATAATTCTTTAACCCCCACCGACCTCTCTCACCCCATTAAAAAGAGCCGCCGCGGCCCAAGGTCACGTAGCTCCCAGTACCGCGGCGTCACTTTCTACCGGAGAACCGGCCGTTGGGAGTCACATATTTGGGATTGTGGAAAGCAAGTCTATCTCGGTGGATTCGATACAGCACATGCAGCTGCTCGTGCTTACGATAGAGCGGCCATTAAATTCCGAGGGGTAGAAGCGGACATAAACTTCAGCATCGAAGATTACGAAGACGATTTAAAACAGATGGGAAATCTAACAAAGGAGGAATTTGTGCATGTACTTCGCCGACAAAGCACTGGATTCCCCAGAGGGAGCTCCAAATATAGAGGCGTTACGCTTCATAAGTGTGGAAGATGGGAAGCTCGAATGGGCCAATTTCTTGGCAAAAAGTATGTTTATTTGGGTTTGTTTGATACGGAGATTGAAGCAGCAAGGGCTTATGATAAAGCTGCAATCAAGTGTAATGGCAAAGAAGCTGTCACCAATTTCGACCCCAGCATCTACGAGAATGAACTGAATCCGACAACTGAATCAAGTAGCAATTTGGGGGATCATAGTCTTGATTTAAGTTTAGGGAATTCAAGCTCAAAGCAAAACGACAGCTCAAATAATGGTTCCATAGGTCCACAACACCATTCTTCTTCTTCTTCTTCAGCTGATTGGCAACGCAATCACGGATTTAGGCCTCTTCAGGTAATTCTTTTGAAATTATCATATTAA 1113 47.62 MWDLNDWPDVREEDECSSAKTSIEGEGDEEKGKRVGSLSNSSSSAVVMEEEEVEVEGGSDEEEPTPMVTRQFFPLEETEIPTPLPHASTTSAPPAAAAAFPRAHWVGVKFAHPDPLAALPNNSLTPTDLSHPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEDDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNPTTESSSNLGDHSLDLSLGNSSSKQNDSSNNGSIGPQHHSSSSSSADWQRNHGFRPLQVILLKLSY 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3713741 3716889 - MELO3C007572.2.1 Cme08g00585 334848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00585 370 MobiDBLite consensus disorder prediction 1 35 - -
Cme08g00585 370 MobiDBLite consensus disorder prediction 302 353 - -
Cme08g00585 370 SMART rav1_2 146 208 IPR001471 GO:0003700|GO:0006355
Cme08g00585 370 SMART rav1_2 238 301 IPR001471 GO:0003700|GO:0006355
Cme08g00585 370 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 357 - -
Cme08g00585 370 Gene3D AP2/ERF domain 145 204 IPR036955 GO:0003700|GO:0006355
Cme08g00585 370 Gene3D AP2/ERF domain 237 296 IPR036955 GO:0003700|GO:0006355
Cme08g00585 370 Pfam AP2 domain 146 194 IPR001471 GO:0003700|GO:0006355
Cme08g00585 370 Pfam AP2 domain 237 286 IPR001471 GO:0003700|GO:0006355
Cme08g00585 370 SUPERFAMILY DNA-binding domain 145 203 IPR016177 GO:0003677
Cme08g00585 370 MobiDBLite consensus disorder prediction 1 65 - -
Cme08g00585 370 ProSiteProfiles AP2/ERF domain profile. 146 202 IPR001471 GO:0003700|GO:0006355
Cme08g00585 370 SUPERFAMILY DNA-binding domain 237 297 IPR016177 GO:0003677
Cme08g00585 370 PRINTS Ethylene responsive element binding protein signature 239 250 IPR001471 GO:0003700|GO:0006355
Cme08g00585 370 PRINTS Ethylene responsive element binding protein signature 277 297 IPR001471 GO:0003700|GO:0006355
Cme08g00585 370 ProSiteProfiles AP2/ERF domain profile. 238 295 IPR001471 GO:0003700|GO:0006355
Cme08g00585 370 MobiDBLite consensus disorder prediction 119 146 - -
Cme08g00585 370 CDD AP2 237 297 IPR001471 GO:0003700|GO:0006355
Cme08g00585 370 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TOE3 1 357 - -
Cme08g00585 370 CDD AP2 146 201 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme08g00585 Cme11g00347 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02563 Cme-Chr4:31757832 Cme08g00585 Cme-Chr8:3713741 1.36E-77 dispersed
Cme08g00585 Cme-Chr8:3713741 Cme11g01754 Cme-Chr11:25705936 3.16E-11 dispersed
Cme11g00347 Cme-Chr11:3595067 Cme08g00585 Cme-Chr8:3713741 8.91E-128 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41783 PF00847 AP2 2.20E-10 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00585 K09284 - csv:101214724 612.453