Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00586 ATGGACGGCGGAGGAGTACCAGAAGCTACAAGAAAAAGATCAGGCCTCGACAATCAGAGGCTCTACAAAGGGATAAGGATGAGGAAGTGGGGCAAGTGGGTGGCTGAGATTCGAGAGCCCAATAAACGCTCTAGGATTTGGCTCGGCTCTTACTCTTCTCCTGTCGCCGCCGCCAGGGCCTACGATACCGCCGTTTTTTACCTCAGAGGCCCTTCCGCCAGGCTTAATTTTCCCGAGTTGTTAGCAGGGGAAGGCCGTGGAATTACTGCCGGTGCCGGGGATATGTCGGCGGCTTCTATACGGAAGAAAGCCACGGAGGTTGGGGCAAGAGTGGATGCTCAGGAGAGTTCCTTGGGCCAACAGAGTCGGAGCCATCATTCCCACACATCGGCATCTCCGCCAGAGACGAAAGGGTGCAGCGGGTTCTTGGATCGGGTGGATTTGAACAAATTACCCGACCCGGAAGAAGAAGATGAAGAAGGGGATGGTGAGTTCGAGTGGGAGAGAGTCGAGAGACACTGA 522 55.17 MDGGGVPEATRKRSGLDNQRLYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFYLRGPSARLNFPELLAGEGRGITAGAGDMSAASIRKKATEVGARVDAQESSLGQQSRSHHSHTSASPPETKGCSGFLDRVDLNKLPDPEEEDEEGDGEFEWERVERH 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3731857 3732971 - MELO3C007573.2.1 Cme08g00586 334849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00586 173 MobiDBLite consensus disorder prediction 114 136 - -
Cme08g00586 173 MobiDBLite consensus disorder prediction 108 173 - -
Cme08g00586 173 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 4 159 - -
Cme08g00586 173 SUPERFAMILY DNA-binding domain 21 79 IPR016177 GO:0003677
Cme08g00586 173 CDD AP2 22 80 IPR001471 GO:0003700|GO:0006355
Cme08g00586 173 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 4 159 - -
Cme08g00586 173 Pfam AP2 domain 22 70 IPR001471 GO:0003700|GO:0006355
Cme08g00586 173 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Cme08g00586 173 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Cme08g00586 173 PRINTS Ethylene responsive element binding protein signature 60 80 IPR001471 GO:0003700|GO:0006355
Cme08g00586 173 Gene3D AP2/ERF domain 21 79 IPR036955 GO:0003700|GO:0006355
Cme08g00586 173 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme08g00586 Cme11g00348 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00327 Cme-Chr7:2085146 Cme08g00586 Cme-Chr8:3731857 2.35E-50 dispersed
Cme08g00586 Cme-Chr8:3731857 Cme05g01995 Cme-Chr5:28458946 4.80E-24 dispersed
Cme11g00348 Cme-Chr11:3607823 Cme08g00586 Cme-Chr8:3731857 6.17E-52 wgd
Cme03g02066 Cme-Chr3:28145674 Cme08g00586 Cme-Chr8:3731857 9.07E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41784 PF00847 AP2 2.30E-11 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00586 K09286 - csv:101214481 323.553