Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00588 ATGAACCCAATCCTCCCCACATTTCTTCCTTCTCTTTCACTTTTCTCTTCTTTTCTTCTGTTTTCTCTCTTTGTTACTTCCGCCTCTGCCTCTGGGTTTGACTTTCAAATTCCGCCGGAAGACTTACTGCTGCCCTCCGACGCTGTTTCTCTTCTTTCTTTCAAGTCCAAAGCCGACTTGGACAACAAGCTTCTTTACACTCTTAATGAACGCTTTGATTACTGTCAATGGCAGGGTGTGAAGTGCGTTCAGGGTCGTGTTGTTCGACTGGTTCTTCAATCCTTTGGTCTTCGAGGGACATTGGCTCCAAATACAGTGTCTCAGCTCGACCAGCTTCGGATTCTCAGCCTGCATAATAACTCCCTCGAAGGACCCATTCCGGACTTATCCAGACTCTTCAATCTTAAATCTCTGTTTCTTGGACGAAACTCCTTCGTTGGGTCTTTTCCGCCGTCGATTCTCACTCTTCACCGGCTTCAGACTCTTGATCTTTCCTATAATAAGTTTACTGGTCCACTCCCGGTGAGGCTTTCGTCCTTGGACCGGCTCATTACTCTTCGCCTCGAATGGAATGGCTTCAATGGAAGTATTCCTCCTCTAAATCAGTCATTCCTTGAGGTCCTCAATGTCACGGGAAACAACCTGACCGGGCAAATTCCAGTTACCCCTACTCTGTCGCGTTTCAACACGTCGTCGTTTTTCTGGAACCCAGATCTCTGTGGCGAGATCGTTAACAAGGCATGCCATTCACCCGTTCCATTCTTTGAAACTTCCAACGCCACTCCCCCACCATCTATCCCTTCCGTCCAAAGCGCACAGTCACAGGATGTACTTCTCTCTCCAGTTACTCATGTTAAGCACAAGGAAACCGGTATGATTTTGGGGCTTTCAGTCGGCGCTGCAGTTTTAGTAGCCGGGGTTTTATGTTTCTATGTAGCTGCTAGAACCCAAAGAAGTCAAACTACGTCGAAGCAGGCAATGCCGCAGTTCGAAACCGAAACTAATTTTTCCACAGCTTCCGCAATGAACGACCGAGTCGACGGGAAGGGCGAATTTTTTGCCAAAGTGAAAGAAAGTGAAGAAATGCCAAAAACCCATAAGAGTGGTAATCTTATATTTTGTGAAGGGGAAGCAGAATTATTCAACTTAGAGCAGTTAATGAGGGCTTCGGCCGAGCTACTCGGCAGAGGCACAATGGGAACTACATACAAAGCAGTGCTCTGCAACCAGCTCATTGTAACGGTGAAACGTCTTGACGCTACTAAGACCGCTACGACCAGCAGCGAAGTGTTCGACCGGCATTTGGGAGCAGTGGGTGCGCTTCGTCATCCCAATTTGGTACCAGTTAGGGCATATTTCCAAGCCAAGGGAGAGAGATTAGTGGTATACGATTACCAACCTAATGGCAGTCTTTACAACCTCATTCACGGTTCAAGATCAGCAAGGGCTAAGCCTTTACACTGGACATCATGCTTGAAGATTGCAGAAGATTTAGCTCAGGGCATTGCCTATATACATCAAGCTTCGAGGTTAATCCATGGCAACTTAAAGTCTAGTAATGTTCTTCTTGGTGCAGAGTTTGAGGCCTGTCTCACAGACTATGGCCTTTCTGCTCTGGCAGAGGCCTATGAAGATCCAGATTGTTCACGGTACCAAGCCCCTGAAACTCGCAAGTCGAGCCGGAATGCAACACAGAAGAGCGATGTCTATGCATTCGGCGTCCTTTTACTTGAGCTTTTGACGGGAAGACATCCTGCACACCATCCATTTCTTGAGCCAACTGACATGCCAGAATGGGTGAGAGTAGTTAGAGAAGATGATGGTGGGGATAGTAACCAACTTGGAATGCTTACTGAGGTGGCTAGCCTCTGCAGCACTACATCGCCTGAACAGAGGCCAGCCATGTGGCAAGTTTTGAAGATGATACTGGAGATTAAAGAGAGTGTCATGACAGAGGACAGTGAATCTAGTGGCTTTTAA 1980 47.27 MNPILPTFLPSLSLFSSFLLFSLFVTSASASGFDFQIPPEDLLLPSDAVSLLSFKSKADLDNKLLYTLNERFDYCQWQGVKCVQGRVVRLVLQSFGLRGTLAPNTVSQLDQLRILSLHNNSLEGPIPDLSRLFNLKSLFLGRNSFVGSFPPSILTLHRLQTLDLSYNKFTGPLPVRLSSLDRLITLRLEWNGFNGSIPPLNQSFLEVLNVTGNNLTGQIPVTPTLSRFNTSSFFWNPDLCGEIVNKACHSPVPFFETSNATPPPSIPSVQSAQSQDVLLSPVTHVKHKETGMILGLSVGAAVLVAGVLCFYVAARTQRSQTTSKQAMPQFETETNFSTASAMNDRVDGKGEFFAKVKESEEMPKTHKSGNLIFCEGEAELFNLEQLMRASAELLGRGTMGTTYKAVLCNQLIVTVKRLDATKTATTSSEVFDRHLGAVGALRHPNLVPVRAYFQAKGERLVVYDYQPNGSLYNLIHGSRSARAKPLHWTSCLKIAEDLAQGIAYIHQASRLIHGNLKSSNVLLGAEFEACLTDYGLSALAEAYEDPDCSRYQAPETRKSSRNATQKSDVYAFGVLLLELLTGRHPAHHPFLEPTDMPEWVRVVREDDGGDSNQLGMLTEVASLCSTTSPEQRPAMWQVLKMILEIKESVMTEDSESSGF 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3748630 3752125 - MELO3C007574.2.1 Cme08g00588 334851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00588 659 ProSiteProfiles Leucine-rich repeat profile. 111 133 IPR001611 GO:0005515
Cme08g00588 659 Gene3D Ribonuclease Inhibitor 45 201 IPR032675 -
Cme08g00588 659 SUPERFAMILY L domain-like 46 241 - -
Cme08g00588 659 Pfam Protein tyrosine and serine/threonine kinase 392 640 IPR001245 GO:0004672|GO:0006468
Cme08g00588 659 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 17 655 - -
Cme08g00588 659 Gene3D Phosphorylase Kinase; domain 1 354 465 - -
Cme08g00588 659 ProSiteProfiles Protein kinase domain profile. 388 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00588 659 SUPERFAMILY Protein kinase-like (PK-like) 392 646 IPR011009 -
Cme08g00588 659 Gene3D Transferase(Phosphotransferase) domain 1 467 657 - -
Cme08g00588 659 Gene3D Ribonuclease Inhibitor 202 251 IPR032675 -
Cme08g00588 659 PANTHER PROTEIN KINASE, PUTATIVE-RELATED 17 655 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00722 Cme-Chr2:8728491 Cme08g00588 Cme-Chr8:3748630 9.79E-154 dispersed
Cme08g00588 Cme-Chr8:3748630 Cme10g00239 Cme-Chr10:1574589 1.37E-113 dispersed
Cme08g00588 Cme-Chr8:3748630 Cme05g01954 Cme-Chr5:28090976 2.36E-109 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65073 PF00069 Pkinase 4.40E-30 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00588 - - csv:101214244 1223.76