Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme08g00590 | ATGGCCGTGGACCTCATCTCCCACCTTTCCCCACTCCCCAATATGGAACCCAACGCCGTCCAAGAAGCCACTTCCGGCCTCGAAAGCGTCCACAAACTCATCCGTTTACTCTCCATTCCCAATCCCCATTCCTTACCTTCCTCCTCTCAGTCCCCAATCGATTTCCCTTCCGACTGCCGCGCCGCCGCCGACGCTGCCGTCTCCAAGTTCAAAAAAGTCATTTCCCTCCTCGGCCGTAGCCGCCTCGGCCACGCTCGCTTCCGCAGAGCTCCTCTGCCTCAACAACCTCATTACGTTACTCCCATCCAACAGATCCCACCTCATCCCCATCCCCATCTTAACAGCAACAACAGCAACGATGAATCTCTTAATTTCTCCGCTCACAATTCCTTCATTTCTTCTTTGACCGGCGACGCCGATACCAAGCATCCTTCTTCCTCTTCCTCGCCTTTTCTCATTTCCAACCTCTCCCAGGTCTCCTCTGCTGGGAAGCCCCCTCTTTCTAGTTCTTCCCTTAAGAGGAAGTGCAGCTCCGACAACTTGGGATCCGGCAAGTGCGCCGCTGCTTCTTCCTCTGCTCGATGTCACTGTTCCAAAAAGAGAAAATTGAGGGTGAAGAGAGTGGTGAGAGTTCCAGCAATAAGCTTGAAAATGGCGGACATCCCACCGGACGATTATTCATGGAGGAAGTATGGTCAAAAGCCCATTAAAGGCTCTCCACATCCCAGGGGTTATTACAAGTGTAGCAGTGTAAGAGGTTGTCCAGCCCGGAAACACGTAGAACGGGCCGTAGACGATCCGGCGATGCTAGTAGTGACTTACGAAGGAGAACACAATCACACCCTCTCTCTGCCCGAAACCTCTAGTCTCATCCTCGAGTCCTCGTAG | 888 | 53.15 | MAVDLISHLSPLPNMEPNAVQEATSGLESVHKLIRLLSIPNPHSLPSSSQSPIDFPSDCRAAADAAVSKFKKVISLLGRSRLGHARFRRAPLPQQPHYVTPIQQIPPHPHPHLNSNNSNDESLNFSAHNSFISSLTGDADTKHPSSSSSPFLISNLSQVSSAGKPPLSSSSLKRKCSSDNLGSGKCAAASSSARCHCSKKRKLRVKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAVDDPAMLVVTYEGEHNHTLSLPETSSLILESS | 295 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 3758983 | 3763932 | - | MELO3C007576.2.1 | Cme08g00590 | 334853 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme08g00590 | 295 | MobiDBLite | consensus disorder prediction | 91 | 121 | - | - | |
Cme08g00590 | 295 | SMART | WRKY_cls | 222 | 282 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cme08g00590 | 295 | Pfam | WRKY DNA -binding domain | 224 | 280 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cme08g00590 | 295 | PANTHER | WRKY TRANSCRIPTION FACTOR 7-RELATED | 11 | 295 | - | - | |
Cme08g00590 | 295 | Gene3D | WRKY domain | 206 | 283 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cme08g00590 | 295 | Pfam | Plant zinc cluster domain | 173 | 220 | IPR018872 | - | |
Cme08g00590 | 295 | SUPERFAMILY | WRKY DNA-binding domain | 219 | 281 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cme08g00590 | 295 | ProSiteProfiles | WRKY domain profile. | 217 | 283 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cme08g00590 | 295 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 11 | 295 | IPR044810 | GO:0003700 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme08g00590 | Cme-Chr8:3758983 | Cme11g00698 | Cme-Chr11:8243822 | 2.18E-107 | dispersed | |
Cme01g00638 | Cme-Chr1:5404867 | Cme08g00590 | Cme-Chr8:3758983 | 1.07E-16 | transposed | |
Cme01g02020 | Cme-Chr1:28771807 | Cme08g00590 | Cme-Chr8:3758983 | 2.36E-56 | transposed | |
Cme02g01624 | Cme-Chr2:23403264 | Cme08g00590 | Cme-Chr8:3758983 | 2.94E-70 | transposed | |
Cme04g00334 | Cme-Chr4:2660995 | Cme08g00590 | Cme-Chr8:3758983 | 7.77E-76 | transposed | |
Cme05g00464 | Cme-Chr5:4242020 | Cme08g00590 | Cme-Chr8:3758983 | 7.86E-55 | transposed | |
Cme06g00109 | Cme-Chr6:694783 | Cme08g00590 | Cme-Chr8:3758983 | 1.33E-16 | transposed | |
Cme07g00334 | Cme-Chr7:2126230 | Cme08g00590 | Cme-Chr8:3758983 | 1.40E-32 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41785 | PF03106 | WRKY | 3.60E-26 | CL0274 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme08g00590 | - | - | csv:101214001 | 497.278 |