Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00590 ATGGCCGTGGACCTCATCTCCCACCTTTCCCCACTCCCCAATATGGAACCCAACGCCGTCCAAGAAGCCACTTCCGGCCTCGAAAGCGTCCACAAACTCATCCGTTTACTCTCCATTCCCAATCCCCATTCCTTACCTTCCTCCTCTCAGTCCCCAATCGATTTCCCTTCCGACTGCCGCGCCGCCGCCGACGCTGCCGTCTCCAAGTTCAAAAAAGTCATTTCCCTCCTCGGCCGTAGCCGCCTCGGCCACGCTCGCTTCCGCAGAGCTCCTCTGCCTCAACAACCTCATTACGTTACTCCCATCCAACAGATCCCACCTCATCCCCATCCCCATCTTAACAGCAACAACAGCAACGATGAATCTCTTAATTTCTCCGCTCACAATTCCTTCATTTCTTCTTTGACCGGCGACGCCGATACCAAGCATCCTTCTTCCTCTTCCTCGCCTTTTCTCATTTCCAACCTCTCCCAGGTCTCCTCTGCTGGGAAGCCCCCTCTTTCTAGTTCTTCCCTTAAGAGGAAGTGCAGCTCCGACAACTTGGGATCCGGCAAGTGCGCCGCTGCTTCTTCCTCTGCTCGATGTCACTGTTCCAAAAAGAGAAAATTGAGGGTGAAGAGAGTGGTGAGAGTTCCAGCAATAAGCTTGAAAATGGCGGACATCCCACCGGACGATTATTCATGGAGGAAGTATGGTCAAAAGCCCATTAAAGGCTCTCCACATCCCAGGGGTTATTACAAGTGTAGCAGTGTAAGAGGTTGTCCAGCCCGGAAACACGTAGAACGGGCCGTAGACGATCCGGCGATGCTAGTAGTGACTTACGAAGGAGAACACAATCACACCCTCTCTCTGCCCGAAACCTCTAGTCTCATCCTCGAGTCCTCGTAG 888 53.15 MAVDLISHLSPLPNMEPNAVQEATSGLESVHKLIRLLSIPNPHSLPSSSQSPIDFPSDCRAAADAAVSKFKKVISLLGRSRLGHARFRRAPLPQQPHYVTPIQQIPPHPHPHLNSNNSNDESLNFSAHNSFISSLTGDADTKHPSSSSSPFLISNLSQVSSAGKPPLSSSSLKRKCSSDNLGSGKCAAASSSARCHCSKKRKLRVKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAVDDPAMLVVTYEGEHNHTLSLPETSSLILESS 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3758983 3763932 - MELO3C007576.2.1 Cme08g00590 334853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00590 295 MobiDBLite consensus disorder prediction 91 121 - -
Cme08g00590 295 SMART WRKY_cls 222 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme08g00590 295 Pfam WRKY DNA -binding domain 224 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme08g00590 295 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 11 295 - -
Cme08g00590 295 Gene3D WRKY domain 206 283 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme08g00590 295 Pfam Plant zinc cluster domain 173 220 IPR018872 -
Cme08g00590 295 SUPERFAMILY WRKY DNA-binding domain 219 281 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme08g00590 295 ProSiteProfiles WRKY domain profile. 217 283 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme08g00590 295 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 11 295 IPR044810 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00590 Cme-Chr8:3758983 Cme11g00698 Cme-Chr11:8243822 2.18E-107 dispersed
Cme01g00638 Cme-Chr1:5404867 Cme08g00590 Cme-Chr8:3758983 1.07E-16 transposed
Cme01g02020 Cme-Chr1:28771807 Cme08g00590 Cme-Chr8:3758983 2.36E-56 transposed
Cme02g01624 Cme-Chr2:23403264 Cme08g00590 Cme-Chr8:3758983 2.94E-70 transposed
Cme04g00334 Cme-Chr4:2660995 Cme08g00590 Cme-Chr8:3758983 7.77E-76 transposed
Cme05g00464 Cme-Chr5:4242020 Cme08g00590 Cme-Chr8:3758983 7.86E-55 transposed
Cme06g00109 Cme-Chr6:694783 Cme08g00590 Cme-Chr8:3758983 1.33E-16 transposed
Cme07g00334 Cme-Chr7:2126230 Cme08g00590 Cme-Chr8:3758983 1.40E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41785 PF03106 WRKY 3.60E-26 CL0274 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00590 - - csv:101214001 497.278