Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme08g00594 | ATGGATAATGGAACTTCTAATAGTTCAACACAATCGGCAGTCAACAATTCAGCTCCAACAGTTGATAACCAAAGTAGTAAAGTAGATAATTTGACATCTATTTTATCTACGTCCGGCTTTTCATCTTGGGCTAAGAGTTTTAGGAATCCACAACCTGAAGCAGCAAAAAACGACTCCAACGCAGGAAATTCTGGGATGTCAGCGATTGCTCGTTTCAGTAGCGGATTTGGACTCCAGATACCTAAAATGTCTTCTGTACAAGGCGATGGTGCTGCAGATACCAATTCTGGGATGAAATCTGGTGTATTTGAATCATTAACAAAAGGTTTAGTCGACACATCTCAGAATGCGGTAAAGGCTATGCAAGTAAAGGCACGCCATATGGTCTCTCAGAATAAGCGAAGATATCAGGAAGGAGAATTTGATTTGGATTTGACGTATATCACTGAAAACGTAATTGCTATGGGGTTTCCTGCTGGTCACATGAGCTCTGGAATTTTCGGATTCCTTGAGGGATTTTACAGAAATCATATGGAAGAAGTGATCAAATTTTTTGAAACTCATCATAAGGGAAAATACAAAGTTTACAATCTTTGTTCAGAGCGTTTGTATGATGCCTCATTATTTGAGGGGAAGGTTGCACATTTTCCGTTTGATGATCATAATTGTCCTCCTATCCATCTCATAAAATCATTTTGTCAAAGTGCATATGCATGGTTGAAGGAGGATATCGAGAACGTGGTTGTTGTTCATTGTAAAGCTGGTATGGCAAGAACAGGGCTAATGATTTGCAGCCTCCTTCTATTCCTAAAGTTCTTCCAAACATCACCAGAGGCAGTTGACTATTACAATCAGAAAAGATGCGTGGATGGGAAGGCTTTGGTTCTTCCTAGTCAGATTAGGTATGTCAAGTATTTTGAGCGCATTTTAACACAATTCAATGGAAATACTCCACCAGGACGGAGGTGCATGCTGAGAGGTTTTCGGCTTCACAAGTGCCCGTATTGGGTCAGGCCTTCCATTACAATATCGAATCACAGTGAGATTTTGTTCTCAACAAGAAAGCATCAGAAGACGAAGGATTTAATGGTGAATTGGTTAAATACAACAATGACCGAAAACAAAGTATTATTAAGCGACACGGATCTTGATGGTTTTGATAAGAGAAAACTCCCAACTCCTGGATTTCAAGTCGAAGTTGTGATGATAGACTATGATGGTACTTTGCCAGCACGATTGAAAACTGATTCAGCTGGCAAAGGATCTGATCGTCGTTCTATTCACAATCGAGCCTCAGGTCATGAAGCAGGACAATCCAATTCAAACAAAATGTCCGAAGGTGAAGAAAACGATGACAATGTATTCTCTGATAGCGACGAAGAAAATGGGGACATAAAAACCAGTCTAACTCAATCAACTTCTGGAAATGGAAATGGAAACTCAAAAACTGATCATTCATCAACAATAATTTTCTCCGAAAGAATTGGGAGTTTAGCTCATGAAACTAGTCATTTATCCTTCGGAAATGAGAAAAACTCACAACCTAATGCTCCCAAAGAACCTGCCGCGATACAACCGTCAGGCCTAGAGATCCCAAATTTGGATTCAGTAAGAGCAAGTGATTTCAAGGCAATAGCCGCTGATGCGTCAGTTTTCACCTTTGGGGATGAAGAAGACTTTGATAGTGAATGA | 1692 | 40.01 | MDNGTSNSSTQSAVNNSAPTVDNQSSKVDNLTSILSTSGFSSWAKSFRNPQPEAAKNDSNAGNSGMSAIARFSSGFGLQIPKMSSVQGDGAADTNSGMKSGVFESLTKGLVDTSQNAVKAMQVKARHMVSQNKRRYQEGEFDLDLTYITENVIAMGFPAGHMSSGIFGFLEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVAHFPFDDHNCPPIHLIKSFCQSAYAWLKEDIENVVVVHCKAGMARTGLMICSLLLFLKFFQTSPEAVDYYNQKRCVDGKALVLPSQIRYVKYFERILTQFNGNTPPGRRCMLRGFRLHKCPYWVRPSITISNHSEILFSTRKHQKTKDLMVNWLNTTMTENKVLLSDTDLDGFDKRKLPTPGFQVEVVMIDYDGTLPARLKTDSAGKGSDRRSIHNRASGHEAGQSNSNKMSEGEENDDNVFSDSDEENGDIKTSLTQSTSGNGNGNSKTDHSSTIIFSERIGSLAHETSHLSFGNEKNSQPNAPKEPAAIQPSGLEIPNLDSVRASDFKAIAADASVFTFGDEEDFDSE | 563 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 3786333 | 3791489 | + | MELO3C007580.2.1 | Cme08g00594 | 334857 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme08g00594 | 563 | MobiDBLite | consensus disorder prediction | 465 | 485 | - | - | |
| Cme08g00594 | 563 | Gene3D | Protein tyrosine phosphatase superfamily | 119 | 316 | IPR029021 | - | |
| Cme08g00594 | 563 | PANTHER | PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B | 5 | 363 | - | - | |
| Cme08g00594 | 563 | PANTHER | PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B | 366 | 563 | - | - | |
| Cme08g00594 | 563 | MobiDBLite | consensus disorder prediction | 414 | 485 | - | - | |
| Cme08g00594 | 563 | ProSiteProfiles | Phosphatase tensin-type domain profile. | 134 | 313 | IPR029023 | - | |
| Cme08g00594 | 563 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 250 | 260 | IPR016130 | GO:0016311|GO:0016791 | |
| Cme08g00594 | 563 | MobiDBLite | consensus disorder prediction | 417 | 431 | - | - | |
| Cme08g00594 | 563 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 5 | 363 | - | - | |
| Cme08g00594 | 563 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 366 | 563 | - | - | |
| Cme08g00594 | 563 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 142 | 310 | IPR029021 | - | |
| Cme08g00594 | 563 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Cme08g00594 | 563 | CDD | PTP_PTEN | 144 | 309 | IPR045101 | GO:0016791 | |
| Cme08g00594 | 563 | MobiDBLite | consensus disorder prediction | 505 | 527 | - | - | |
| Cme08g00594 | 563 | MobiDBLite | consensus disorder prediction | 505 | 520 | - | - | |
| Cme08g00594 | 563 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 248 | 287 | IPR000387 | GO:0016311|GO:0016791 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme04g02013 | Cme-Chr4:27675599 | Cme08g00594 | Cme-Chr8:3786333 | 4.31E-44 | dispersed | |
| Cme08g00594 | Cme-Chr8:3786333 | Cme02g01861 | Cme-Chr2:25245447 | 7.11E-07 | dispersed | |
| Cme01g00074 | Cme-Chr1:521937 | Cme08g00594 | Cme-Chr8:3786333 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme08g00594 | K01110 | - | csv:101213277 | 1066.6 |