Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme08g00636 | ATGAGTTGCAACGGTTGCCGTGTTCTTCGAAAGGGCTGCAGTGAATCCTGTATTCTTCGCCCTTGCTTGCAGTGGATTGATACCTCCGAAGCTCAAGGCCACGCCACTGTATTCGTCGCTAAGTTCTTTGGCCGTGCCGGACTTATGTCATTCATCTCTGCCGTACCCGAATCTCAGAGACCTTCTTTGTTTCAGTCTTTGTTGTTCGAAGCTTGCGGACGCACCGTGAATCCCGTTAACGGTGCTGTTGGTCTTCTCTGGACTGGAAACTGGCACGTTTGTCAGGCTGCCGTCGACACTGTCTTACGCGGCGGTACGTTGCGGCCGATCAATGATTTCCTTGCTGCTGGATCCCCTAATCTGGCCTCCGACGACACTTCCGAGACTGAAGTAGCATGTACCGACATGTGGAAGATACGAGATTCTTATCCTAATTCCCGATTCTCCAACTCCCGATCTAGGCTCTCGCCGAAACGCAAGCGATCCGAGGAATCGTCCACTAAGCACCAACTGAACGACCTAGATCTCCGCTTGACTCCCACTTTTCCAGCCAAATCAACCCTCCGTGCCGCTACTCCGTCCATGAATTCCGAGGAATCCGAGACCACAACGTGCTTCGAGAGCGGCCTCGGTGATAATCATCATCATTATCCAGAAGAAGGAACCGCTCAACGGAAACTTCTCAATTTGTTCGTCTAA | 699 | 51.79 | MSCNGCRVLRKGCSESCILRPCLQWIDTSEAQGHATVFVAKFFGRAGLMSFISAVPESQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVDTVLRGGTLRPINDFLAAGSPNLASDDTSETEVACTDMWKIRDSYPNSRFSNSRSRLSPKRKRSEESSTKHQLNDLDLRLTPTFPAKSTLRAATPSMNSEESETTTCFESGLGDNHHHYPEEGTAQRKLLNLFV | 232 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 4118183 | 4119443 | - | MELO3C007620.2.1 | Cme08g00636 | 334899 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme08g00636 | 232 | MobiDBLite | consensus disorder prediction | 146 | 173 | - | - | |
Cme08g00636 | 232 | MobiDBLite | consensus disorder prediction | 156 | 171 | - | - | |
Cme08g00636 | 232 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN | 1 | 232 | - | - | |
Cme08g00636 | 232 | ProSiteProfiles | LOB domain profile. | 1 | 107 | IPR004883 | - | |
Cme08g00636 | 232 | Pfam | Lateral organ boundaries (LOB) domain | 2 | 100 | IPR004883 | - | |
Cme08g00636 | 232 | MobiDBLite | consensus disorder prediction | 188 | 209 | - | - | |
Cme08g00636 | 232 | MobiDBLite | consensus disorder prediction | 188 | 220 | - | - | |
Cme08g00636 | 232 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 232 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme02g01743 | Cme-Chr2:24424860 | Cme08g00636 | Cme-Chr8:4118183 | 1.21E-50 | dispersed | |
Cme08g00636 | Cme-Chr8:4118183 | Cme10g00257 | Cme-Chr10:1686542 | 6.29E-49 | dispersed | |
Cme07g00295 | Cme-Chr7:1922289 | Cme08g00636 | Cme-Chr8:4118183 | 2.07E-66 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41788 | PF03195 | LOB | 3.30E-25 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme08g00636 | - | - | csv:101206615 | 435.261 |