Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00636 ATGAGTTGCAACGGTTGCCGTGTTCTTCGAAAGGGCTGCAGTGAATCCTGTATTCTTCGCCCTTGCTTGCAGTGGATTGATACCTCCGAAGCTCAAGGCCACGCCACTGTATTCGTCGCTAAGTTCTTTGGCCGTGCCGGACTTATGTCATTCATCTCTGCCGTACCCGAATCTCAGAGACCTTCTTTGTTTCAGTCTTTGTTGTTCGAAGCTTGCGGACGCACCGTGAATCCCGTTAACGGTGCTGTTGGTCTTCTCTGGACTGGAAACTGGCACGTTTGTCAGGCTGCCGTCGACACTGTCTTACGCGGCGGTACGTTGCGGCCGATCAATGATTTCCTTGCTGCTGGATCCCCTAATCTGGCCTCCGACGACACTTCCGAGACTGAAGTAGCATGTACCGACATGTGGAAGATACGAGATTCTTATCCTAATTCCCGATTCTCCAACTCCCGATCTAGGCTCTCGCCGAAACGCAAGCGATCCGAGGAATCGTCCACTAAGCACCAACTGAACGACCTAGATCTCCGCTTGACTCCCACTTTTCCAGCCAAATCAACCCTCCGTGCCGCTACTCCGTCCATGAATTCCGAGGAATCCGAGACCACAACGTGCTTCGAGAGCGGCCTCGGTGATAATCATCATCATTATCCAGAAGAAGGAACCGCTCAACGGAAACTTCTCAATTTGTTCGTCTAA 699 51.79 MSCNGCRVLRKGCSESCILRPCLQWIDTSEAQGHATVFVAKFFGRAGLMSFISAVPESQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVDTVLRGGTLRPINDFLAAGSPNLASDDTSETEVACTDMWKIRDSYPNSRFSNSRSRLSPKRKRSEESSTKHQLNDLDLRLTPTFPAKSTLRAATPSMNSEESETTTCFESGLGDNHHHYPEEGTAQRKLLNLFV 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4118183 4119443 - MELO3C007620.2.1 Cme08g00636 334899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00636 232 MobiDBLite consensus disorder prediction 146 173 - -
Cme08g00636 232 MobiDBLite consensus disorder prediction 156 171 - -
Cme08g00636 232 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 232 - -
Cme08g00636 232 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Cme08g00636 232 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Cme08g00636 232 MobiDBLite consensus disorder prediction 188 209 - -
Cme08g00636 232 MobiDBLite consensus disorder prediction 188 220 - -
Cme08g00636 232 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 232 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01743 Cme-Chr2:24424860 Cme08g00636 Cme-Chr8:4118183 1.21E-50 dispersed
Cme08g00636 Cme-Chr8:4118183 Cme10g00257 Cme-Chr10:1686542 6.29E-49 dispersed
Cme07g00295 Cme-Chr7:1922289 Cme08g00636 Cme-Chr8:4118183 2.07E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41788 PF03195 LOB 3.30E-25 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00636 - - csv:101206615 435.261