Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00647 ATGGATACCTTGTTTCGGCTTGTTAATCTTCAATCTGATCAACAATCTTACAATTCCAGTAGGAGTACTAATTCAAGCAGTTCTAGATCTTCTAGACAAAACCAATACCATCATTACCATCAACAAGAAGACGAAGAATGCTACAATCTTCTCATGGATGACGAAGATTTCTCATCGTCTAGTAATTCTAGACAATATTATAATAATAATCCATACCATCCTCCTCATCCATCTTCTACCACTACCCCAACTCCTCCGCTCGATCAATTCTCATTCCTTTCACCTTCACCGGATTTCAACTTCGAATTTTCCGGTAGGTGGGCCCCTGATATTCTCCTTGAAACTGCCAGGGCTATTTCTGACAGGAACAGCGCTCGCGTTCAGCAACTCATGTGGATGCTAAACGAACTCAGCTCTCCCTATGGAGATACGGATCAAAAGCTAGCTGCCTATTTTCTGCAAGCCTTGTTTAGCCGTATGACTGATTCCGGCGACCGTAATTACCGCGCTTTGGCATCTGCTTCTGAGAAAACGTGTTCATTCGAATCAACTAGGAAAGTGATGCTCAAGTTCCAGGAGGTTAGCCCTTGGACCACTTTTGGCCATGTTTCTTGCAATGGCGCATTAATTGAAGCTTTAGAAGGCGAATCGAAGCTACATATAATCGATATTAGCAATACCTATTGTACGCAGTGGCCTACTTTGCTTGAAGCTCTAGCTACTCGCACCGACGATACGCCACACCTCCGTCTCACGACGGTGGTTACCACCAAGCCGAGCGGTGGAACCGGAACTGCGGCTTCTCAAAAAGTAATGAAAGAAATTGGTACAAGAATGGAAAAGTTCGCTAGGCTTATGGGCGTACCTTTTAAATTCAATGCGCTTTACCATTCTGGTGATCTTTCGGAATTGGACATGGCGAAATTAGATATTAAAGAAGACGAGGCACTTGCGATTAACTGCGTCGGAGCTTTACGTTCTGTGGCGGCGATTAACAACCGTCGAGATTTCTTGATTTCGTCTTTCCGTAGTTTACGGCCGCGGATCATCACGGTGATTGAAGAGGAAGCGGATCTCGACGTTGGGGTTGATGGAATTGAATTTATGAGAGGTTTTCAAGAATGTTTGCGGTGGTTTAGGGTTTACTTCGAGACATTGGACGAGAGTTTCTCGAGGACGAGTAATGAGCGGTTGATGCTCGAGAGAGCGGCCGGTAGGGCAATCGTGGACCTAGTGGCTTGTTCGGCGGCGGAATCGGTTGAGAGGCGGGAAACGGCGTCGCGGTGGGCTCAGCGGCTGCATGGAAATGGATTTGGTCCAGTGACGTTCAGCGACGAAGTGTGCGACGACGTTAGGGCGTTGTTGAGGAGATACAAGGAAGGATGGGCAATGACACAGAGCTCGGACGTCGCCGGAATATTCTTGACGTGGAAAGAGCAGCCGGTGGTGTGGGCCAGTGCATGGAGACCTTGA 1473 47.39 MDTLFRLVNLQSDQQSYNSSRSTNSSSSRSSRQNQYHHYHQQEDEECYNLLMDDEDFSSSSNSRQYYNNNPYHPPHPSSTTTPTPPLDQFSFLSPSPDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYRALASASEKTCSFESTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTTKPSGGTGTAASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGDLSELDMAKLDIKEDEALAINCVGALRSVAAINNRRDFLISSFRSLRPRIITVIEEEADLDVGVDGIEFMRGFQECLRWFRVYFETLDESFSRTSNERLMLERAAGRAIVDLVACSAAESVERRETASRWAQRLHGNGFGPVTFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAWRP 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4237066 4238972 - MELO3C007630.2.1 Cme08g00647 334910

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00647 490 ProSiteProfiles GRAS family profile. 99 489 IPR005202 -
Cme08g00647 490 MobiDBLite consensus disorder prediction 11 35 - -
Cme08g00647 490 MobiDBLite consensus disorder prediction 57 75 - -
Cme08g00647 490 PANTHER PROTEIN SHORT-ROOT 1 489 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Cme08g00647 490 Pfam GRAS domain family 111 489 IPR005202 -
Cme08g00647 490 MobiDBLite consensus disorder prediction 57 89 - -
Cme08g00647 490 MobiDBLite consensus disorder prediction 11 43 - -
Cme08g00647 490 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 489 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00647 - - - csv:101204711 921.768
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02812 Cme-Chr1:35110397 Cme08g00647 Cme-Chr8:4237066 3.06E-43 dispersed
Cme08g00635 Cme-Chr8:4101851 Cme08g00647 Cme-Chr8:4237066 7.44E-52 dispersed
Cme08g00647 Cme-Chr8:4237066 Cme11g00273 Cme-Chr11:2969573 0 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme04g02627 . 74 751 GRAS Transcription Factor Family AT2G37650 54.7 1.8e-198 689.5
Cme12g00163 . 316 698 GRAS Transcription Factor Family AT3G46600 56.1 7.2e-126 448.0
Cme08g00635 . 47 467 GRAS Transcription Factor Family AT3G49950 60.1 1.1e-136 483.4
Cme08g02035 . 356 732 GRAS Transcription Factor Family AT5G41920 56.6 3.2e-115 412.1
Cme07g01458 . 1 243 GRAS Transcription Factor Family AT5G41920 72.7 1.9e-99 359.8
Cme08g00842 . 48 652 GRAS Transcription Factor Family AT5G66770 58.4 1.5e-177 619.8
Cme07g01720 . 1 590 GRAS Transcription Factor Family AT5G66770 55.9 1.1e-172 603.6
Cme11g00929 . 57 545 GRAS Transcription Factor Family AT1G50600 59.9 2.8e-164 575.5
Cme06g02786 . 46 544 GRAS Transcription Factor Family AT1G50600 57.7 6.1e-159 557.8
Cme08g00456 . 103 541 GRAS Transcription Factor Family AT1G50600 55.2 3.5e-138 488.8
Cme04g00788 . 202 593 GRAS Transcription Factor Family AT1G50600 57.7 2.2e-132 469.5
Cme09g01376 . 44 581 GRAS Transcription Factor Family AT1G14920 68.4 1.5e-208 722.6
Cme09g00942 . 53 600 GRAS Transcription Factor Family AT1G14920 60.9 1.2e-181 633.3
Cme06g01579 . 30 554 GRAS Transcription Factor Family AT1G14920 55.1 3.3e-152 535.4
Cme09g00942 . 51 597 GRAS Transcription Factor Family AT1G66350 61.1 1.4e-179 626.3
Cme09g01376 . 1 579 GRAS Transcription Factor Family AT1G66350 56.9 1.5e-173 606.3
Cme06g01579 . 1 553 GRAS Transcription Factor Family AT1G66350 54.8 6.6e-158 554.3
Cme11g00929 . 19 545 GRAS Transcription Factor Family AT5G48150 66.2 5.5e-194 674.1
Cme06g02786 . 17 544 GRAS Transcription Factor Family AT5G48150 57.4 1.4e-168 589.7
Cme08g00456 . 96 541 GRAS Transcription Factor Family AT5G48150 57.1 9.5e-146 513.8
Cme04g00788 . 128 593 GRAS Transcription Factor Family AT5G48150 53.1 2.3e-136 482.6
Cme09g01376 . 46 578 GRAS Transcription Factor Family AT2G01570 69.3 3.1e-212 734.9
Cme09g00942 . 55 598 GRAS Transcription Factor Family AT2G01570 62.2 3.1e-188 655.2
Cme06g01579 . 30 554 GRAS Transcription Factor Family AT2G01570 57.6 9.9e-158 553.9
Cme09g00942 . 51 597 GRAS Transcription Factor Family AT1G66350 61.1 1.4e-179 626.3
Cme09g01376 . 1 579 GRAS Transcription Factor Family AT1G66350 56.9 1.5e-173 606.3
Cme06g01579 . 1 553 GRAS Transcription Factor Family AT1G66350 54.8 6.6e-158 554.3
Cme09g00942 . 55 598 GRAS Transcription Factor Family AT3G03450 61.5 1.4e-177 619.8
Cme09g01376 . 46 578 GRAS Transcription Factor Family AT3G03450 60.0 8.0e-170 594.0
Cme06g01579 . 30 554 GRAS Transcription Factor Family AT3G03450 56.3 3.4e-152 535.4
Cme09g00942 . 44 600 GRAS Transcription Factor Family AT5G17490 56.2 4.7e-159 558.1
Cme09g01376 . 42 578 GRAS Transcription Factor Family AT5G17490 56.8 1.8e-155 546.2
Cme06g01579 . 26 554 GRAS Transcription Factor Family AT5G17490 51.5 9.8e-133 470.7
Cme01g00709 . 1 570 GRAS Transcription Factor Family AT1G21450 58.2 1.4e-175 613.2
Cme06g02786 . 168 544 GRAS Transcription Factor Family AT1G21450 51.9 5.4e-111 398.7
Cme04g00788 . 225 593 GRAS Transcription Factor Family AT1G21450 50.8 1.2e-107 387.5
Cme12g00163 . 324 698 GRAS Transcription Factor Family AT5G59450 56.2 4.2e-127 452.2
Cme04g02627 . 302 751 GRAS Transcription Factor Family AT5G59450 50.8 6.7e-125 444.9
Cme08g00456 . 1 541 GRAS Transcription Factor Family AT4G17230 58.3 4.9e-172 601.3
Cme11g00929 . 52 545 GRAS Transcription Factor Family AT4G17230 52.8 2.4e-142 502.7
Cme06g02786 . 49 544 GRAS Transcription Factor Family AT4G17230 52.3 1.6e-135 479.9
Cme04g00788 . 220 593 GRAS Transcription Factor Family AT4G17230 51.9 6.9e-110 394.8
Cme11g00929 . 134 545 GRAS Transcription Factor Family AT2G04890 66.1 2.6e-160 562.0
Cme06g02786 . 148 544 GRAS Transcription Factor Family AT2G04890 59.4 1.3e-140 496.5
Cme04g00788 . 206 593 GRAS Transcription Factor Family AT2G04890 56.2 2.8e-127 452.2
Cme08g00456 . 161 541 GRAS Transcription Factor Family AT2G04890 56.7 1.0e-121 433.7
Cme02g00585 . 1 471 GRAS Transcription Factor Family AT1G50420 66.9 3.5e-177 618.2
Cme10g00052 . 1 462 GRAS Transcription Factor Family AT1G50420 61.1 4.5e-156 548.1
Cme06g02576 . 405 768 GRAS Transcription Factor Family AT4G00150 55.7 3.5e-104 375.9
Cme07g01720 . 1 590 GRAS Transcription Factor Family AT3G50650 51.7 2.3e-153 539.3
Cme08g02035 . 77 730 GRAS Transcription Factor Family AT3G54220 60.1 1.2e-204 709.9
Cme07g01458 . 1 244 GRAS Transcription Factor Family AT3G54220 66.4 2.3e-91 333.6
Cme08g00647 . 90 490 GRAS Transcription Factor Family AT4G37650 67.6 2.1e-159 559.3
Cme11g00273 . 115 507 GRAS Transcription Factor Family AT4G37650 56.5 3.4e-125 445.7
Cme11g02451 . 69 461 GRAS Transcription Factor Family AT4G37650 50.2 3.7e-111 399.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002542 0 2 2 2 2 2 3 2 2 2 2 2 3 2 2 2 2 2 3 2 2 1 2 2 2 2 2 2 3 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41791 PF03514 GRAS 4.70E-105 CL0063 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g00647 Cme_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0