Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00647 ATGGATACCTTGTTTCGGCTTGTTAATCTTCAATCTGATCAACAATCTTACAATTCCAGTAGGAGTACTAATTCAAGCAGTTCTAGATCTTCTAGACAAAACCAATACCATCATTACCATCAACAAGAAGACGAAGAATGCTACAATCTTCTCATGGATGACGAAGATTTCTCATCGTCTAGTAATTCTAGACAATATTATAATAATAATCCATACCATCCTCCTCATCCATCTTCTACCACTACCCCAACTCCTCCGCTCGATCAATTCTCATTCCTTTCACCTTCACCGGATTTCAACTTCGAATTTTCCGGTAGGTGGGCCCCTGATATTCTCCTTGAAACTGCCAGGGCTATTTCTGACAGGAACAGCGCTCGCGTTCAGCAACTCATGTGGATGCTAAACGAACTCAGCTCTCCCTATGGAGATACGGATCAAAAGCTAGCTGCCTATTTTCTGCAAGCCTTGTTTAGCCGTATGACTGATTCCGGCGACCGTAATTACCGCGCTTTGGCATCTGCTTCTGAGAAAACGTGTTCATTCGAATCAACTAGGAAAGTGATGCTCAAGTTCCAGGAGGTTAGCCCTTGGACCACTTTTGGCCATGTTTCTTGCAATGGCGCATTAATTGAAGCTTTAGAAGGCGAATCGAAGCTACATATAATCGATATTAGCAATACCTATTGTACGCAGTGGCCTACTTTGCTTGAAGCTCTAGCTACTCGCACCGACGATACGCCACACCTCCGTCTCACGACGGTGGTTACCACCAAGCCGAGCGGTGGAACCGGAACTGCGGCTTCTCAAAAAGTAATGAAAGAAATTGGTACAAGAATGGAAAAGTTCGCTAGGCTTATGGGCGTACCTTTTAAATTCAATGCGCTTTACCATTCTGGTGATCTTTCGGAATTGGACATGGCGAAATTAGATATTAAAGAAGACGAGGCACTTGCGATTAACTGCGTCGGAGCTTTACGTTCTGTGGCGGCGATTAACAACCGTCGAGATTTCTTGATTTCGTCTTTCCGTAGTTTACGGCCGCGGATCATCACGGTGATTGAAGAGGAAGCGGATCTCGACGTTGGGGTTGATGGAATTGAATTTATGAGAGGTTTTCAAGAATGTTTGCGGTGGTTTAGGGTTTACTTCGAGACATTGGACGAGAGTTTCTCGAGGACGAGTAATGAGCGGTTGATGCTCGAGAGAGCGGCCGGTAGGGCAATCGTGGACCTAGTGGCTTGTTCGGCGGCGGAATCGGTTGAGAGGCGGGAAACGGCGTCGCGGTGGGCTCAGCGGCTGCATGGAAATGGATTTGGTCCAGTGACGTTCAGCGACGAAGTGTGCGACGACGTTAGGGCGTTGTTGAGGAGATACAAGGAAGGATGGGCAATGACACAGAGCTCGGACGTCGCCGGAATATTCTTGACGTGGAAAGAGCAGCCGGTGGTGTGGGCCAGTGCATGGAGACCTTGA 1473 47.39 MDTLFRLVNLQSDQQSYNSSRSTNSSSSRSSRQNQYHHYHQQEDEECYNLLMDDEDFSSSSNSRQYYNNNPYHPPHPSSTTTPTPPLDQFSFLSPSPDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYRALASASEKTCSFESTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTTKPSGGTGTAASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGDLSELDMAKLDIKEDEALAINCVGALRSVAAINNRRDFLISSFRSLRPRIITVIEEEADLDVGVDGIEFMRGFQECLRWFRVYFETLDESFSRTSNERLMLERAAGRAIVDLVACSAAESVERRETASRWAQRLHGNGFGPVTFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAWRP 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4237066 4238972 - MELO3C007630.2.1 Cme08g00647 334910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00647 490 ProSiteProfiles GRAS family profile. 99 489 IPR005202 -
Cme08g00647 490 MobiDBLite consensus disorder prediction 11 35 - -
Cme08g00647 490 MobiDBLite consensus disorder prediction 57 75 - -
Cme08g00647 490 PANTHER PROTEIN SHORT-ROOT 1 489 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Cme08g00647 490 Pfam GRAS domain family 111 489 IPR005202 -
Cme08g00647 490 MobiDBLite consensus disorder prediction 57 89 - -
Cme08g00647 490 MobiDBLite consensus disorder prediction 11 43 - -
Cme08g00647 490 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 489 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02812 Cme-Chr1:35110397 Cme08g00647 Cme-Chr8:4237066 3.06E-43 dispersed
Cme08g00635 Cme-Chr8:4101851 Cme08g00647 Cme-Chr8:4237066 7.44E-52 dispersed
Cme08g00647 Cme-Chr8:4237066 Cme11g00273 Cme-Chr11:2969573 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41791 PF03514 GRAS 4.70E-105 CL0063 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00647 - - csv:101204711 921.768