Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00648 ATGGGGAAGAAACAGCACAGTAAAGACCGACTTTTTATTACGAAAACTGAATGGGCCACCGAATGGGGTGGCGCCAAATCCAAGGGCTCTCAAACCCCTTTCAAACGGCTTCCTTTCTATTGCTGCGCGCTTACATTTACACCCTTTGAGGATCCTGTATGTACTGCCGATGGCAGCGTGTTCGAGATTATGAATATCATCCCTTATATACGGAAGTATGGGAAAAATCCTGTTACTGGAGCTGCCCTGAAGCAGGAGGAACTAATTCCGCTGACTTTCCATAAGAATTCTGAAGGCGAGTTTCAATGTCCTGTACTAAACAAAGTTTTTACGGAGTTCACTCACATAGTTGCTATAAAGACCACTGGAAATGTCTTCTGCTATGAGGCAGTTAAAGAATTAAATATCAAAACGAAAAACTGGAAGGAACTTCTCACCGATGAACCATTTTGTAGGGAAGATATTATAACCATTCAGAACCCTACTGCGCTTGATAGTAAGGTTCTCCTGGATTTTGATCACGTGAAAAATAGCCTGAAAGTTGATGATGAAGAACTTCAGAAAATGAAATCAGATCCAACATATAACATAAATGTGTCGGGGGACATCAAGCAGATGCTTCAGGAACTTGGAACCGAAAAAGGAAGGCAAACTGCACTTCATGGGGGAGGTGGTGGCAAAGCACAAAAAGAAAGGGCGGCTGCACTTGCTGCAATTTTAGCAGCTAGGTCGCGCATTAAAGAGGATTCCAAAGAGAATGGAAAAGGAGAGGATAAACCTAAGCAGGGATTTAGTATTGTGGATGCTGCATCTGCCTCAGTGCATGGAAGAAGTGCAGCTGCTGCAAAAGCTGCACCAAGTGAAAAAACTGCTGCTCGAATTGCGATGCACATGGCGGGTGAGAGGGCACCAGTAAATGCTAAGATGGTAAAGAGTCGTTACACTACTGGTGCTGCATCCCGGTCCTTCACATCTACATCTTATGATCCTGTTACAAAGAATGAACATGAATATATCAAGGTCGAGAAAAATCCAAAGAAGAAAGGATATGTACAGTTGCATACAACACATGGAGATTTGAATATTGAACTACATTGTGATATTGCACCAAGGGCATGTGAGAATTTCATTACACTTTGTGAAAATGGTTACTACAATGGAGTTGCTTTCCATAGAAATATTAGGAATTTTATGATTCAAGGTGGTGATCCAACTGGTACTGGGAGAGGCGGTGAATCTATATGGGGAAAGCCCTTCAAAGATGAGCTTAACTCCAAGCTGGTTCATTCTGGACGGGGCGTTGTCAGTATGGCAAATAGTGGTCCCCACACTAATGGTTCCCAGTTTTTTATCCTTTACAAATCTGCCAATCACTTAAACTTCAAGCATACTGTATTTGGCAGTGTTGTTGGTGGGTTGACTGCTTTGGCAGCAATGGAAAAGGTTCCCGTTGATGACAACGATCGGCCCCTGGAAGAGATCAAGATAACAAACGTCACAGTTTTTGTGAATCCATATTCAGAACCTGATGAAGAGGAAGAAAAGCAGAAAGACGAAAAGAATGTGGAGGATGAAGAAAACGATAAGGTTGGGTCATGGTATAGTAACCCTGGCACCGGTGTAGCTGAAGACGGAGCTGCTGGTGGCGGTGTAGGGAAATATTTGAAAGCAAGGAATGCCCAATCCAATCCCCCTGCTGTTGATGCTACTCTAAAACAAAATACCTCAACCAAGAAAAGGACAGCTGCAGGAGAATTCAAAGACTTCTCTTCGTGGTAA 1779 43.06 MGKKQHSKDRLFITKTEWATEWGGAKSKGSQTPFKRLPFYCCALTFTPFEDPVCTADGSVFEIMNIIPYIRKYGKNPVTGAALKQEELIPLTFHKNSEGEFQCPVLNKVFTEFTHIVAIKTTGNVFCYEAVKELNIKTKNWKELLTDEPFCREDIITIQNPTALDSKVLLDFDHVKNSLKVDDEELQKMKSDPTYNINVSGDIKQMLQELGTEKGRQTALHGGGGGKAQKERAAALAAILAARSRIKEDSKENGKGEDKPKQGFSIVDAASASVHGRSAAAAKAAPSEKTAARIAMHMAGERAPVNAKMVKSRYTTGAASRSFTSTSYDPVTKNEHEYIKVEKNPKKKGYVQLHTTHGDLNIELHCDIAPRACENFITLCENGYYNGVAFHRNIRNFMIQGGDPTGTGRGGESIWGKPFKDELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGSVVGGLTALAAMEKVPVDDNDRPLEEIKITNVTVFVNPYSEPDEEEEKQKDEKNVEDEENDKVGSWYSNPGTGVAEDGAAGGGVGKYLKARNAQSNPPAVDATLKQNTSTKKRTAAGEFKDFSSW 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4244860 4248841 - MELO3C007631.2.1 Cme08g00648 334911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00648 592 MobiDBLite consensus disorder prediction 508 530 - -
Cme08g00648 592 Pfam U-box domain 39 91 IPR003613 GO:0004842|GO:0016567
Cme08g00648 592 SUPERFAMILY RING/U-box 37 104 - -
Cme08g00648 592 Coils Coil 508 528 - -
Cme08g00648 592 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 354 501 IPR002130 GO:0000413|GO:0003755
Cme08g00648 592 CDD cyclophilin_RING 350 508 - -
Cme08g00648 592 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
Cme08g00648 592 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 590 IPR044666 -
Cme08g00648 592 PANTHER RING-TYPE E3 UBIQUITIN-PROTEIN LIGASE PPIL2 2 590 - -
Cme08g00648 592 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 385 402 IPR020892 GO:0003755|GO:0006457
Cme08g00648 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 364 379 IPR002130 GO:0000413|GO:0003755
Cme08g00648 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 390 402 IPR002130 GO:0000413|GO:0003755
Cme08g00648 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 433 448 IPR002130 GO:0000413|GO:0003755
Cme08g00648 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 448 460 IPR002130 GO:0000413|GO:0003755
Cme08g00648 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 461 476 IPR002130 GO:0000413|GO:0003755
Cme08g00648 592 SMART Ubox_2 39 101 IPR003613 GO:0004842|GO:0016567
Cme08g00648 592 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842|GO:0016567
Cme08g00648 592 MobiDBLite consensus disorder prediction 563 580 - -
Cme08g00648 592 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 96 IPR013083 -
Cme08g00648 592 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 350 501 IPR002130 GO:0000413|GO:0003755
Cme08g00648 592 Gene3D - 330 515 IPR029000 -
Cme08g00648 592 MobiDBLite consensus disorder prediction 504 592 - -
Cme08g00648 592 SUPERFAMILY Cyclophilin-like 350 517 IPR029000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01530 Cme-Chr1:20244408 Cme08g00648 Cme-Chr8:4244860 1.22E-32 dispersed
Cme01g02189 Cme-Chr1:30751335 Cme08g00648 Cme-Chr8:4244860 6.88E-17 dispersed
Cme04g02374 Cme-Chr4:30510724 Cme08g00648 Cme-Chr8:4244860 7.33E-40 dispersed
Cme06g00245 Cme-Chr6:1469136 Cme08g00648 Cme-Chr8:4244860 4.58E-59 dispersed
Cme07g00208 Cme-Chr7:1378635 Cme08g00648 Cme-Chr8:4244860 7.14E-44 dispersed
Cme08g00648 Cme-Chr8:4244860 Cme11g00511 Cme-Chr11:5225399 1.85E-33 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00648 K10598 - csv:101204462 1099.73