Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00653 ATGGAGAGGTTTTTGGAGGAGAATTTTGGTGGCGTCAAACCCAAAAACTCGTCTGAAGAGGTGCTGCAGAGGTGGAGGGAGCTTTGTGGAGTTGTCAAGAATCCCAAAAGAAGGTTTCGATTCACTGCTAATCTCTCTAAGCGTGGGGAAGCTGCTGCTATGCGCCAGAATAATCAGGAAAAGTTGAGGATCGCAGTTTTAGTCTCAAAAGCTGCATTTCAATTTATCCAAGGTGAGCAGTTCTGGAATTTTGATAAAGAAATGTGGTTGTTTGTGGTGGTTTTCTCATATTTGATGGAATTTGTCATGGTATGTTTAGGTGTGCAACCAAGTGACTATACGGTTCCGGAGGAGGTCAAAGCTGCAGGTTTTCATATCTGTGCTGATGAACTTGGGTCTGTTGTTGAAGGCCATGATACAAAGAAGTTTAAATATCATGGTGGGGTTGAAGGGATTGCTCAGAAGCTCTGTACATCAACAACAAATGGGCTTAATGGTGATGCCGACGCACTCAATCATAGGCAAGGGATTTATGGAGTAAATAAATTTGCTGAGAGTGAACAGAGGAGTTTCTTTGTGTTTGTTTGGGAAGCCCTTCAAGACATGACTCTCATGATTCTTGGACTCTGTGCTTTTGTCTCTTTGGTAGTTGGCATAATAACGGAAGGATGGCCACATGGAGCTCACGATGGTCTTGGAATTGTTGCTAGTATCTTATTAGTTGTGTTTGTCACAGCAACTAGTGATTATAGACAATCCCTGCAGTTCAAGGACTTGGATAAGGAGAAAAAGAAGATATCAATTCAGGTTACAAGGAACGGTTACAGACAGAAAATGTCAATCTATGATTTACTTCCTGGGGATATTGTACACCTGTCTATTGGGGATCAAGTCCCTGCTGATGGACTATTTGTTTCAGGGTTTTCTGTGTTGATTGACGAGTCAAGCTTGACAGGAGAAAGTGAGCCAGTGATGGTGACTGCAGAAAACCCCTATCTTCTTTCTGGAACTAAAGTTCAAGATGGATCCTGCAAGATGATGGTCACTACTGTGGGGATGAGAACCCAATGGGGTAAGTTGATGGCCACTCTTAGTGAAGGTGGAGACGATGAAACTCCATTGCAGGTGAAATTAAATGGGGTGGCAACAATTATTGGGAAAATAGGTCTTTTCTTTGCCGTCATCACTTTCGCTGTGTTGGTTCAAGGAATGCTTAGCCGTAAAATCCGAGAAGGGACTCACTGGAGCTGGACAGGAGATGATGCATTAGAGATATTGGAATTCTTTGCTGTTGCAGTTACAATTGTTGTTGTTGCTGTGCCAGAGGGCCTTCCTTTGGCTGTGACGTTAAGTCTAGCCTTTGCCATGAAGAAAATGATGAATGATAAGGCACTCGTCCGTCACTTGGCAGCTTGTGAAACTATGGGTTCTGCCACAAGTATTTGCAGTGACAAAACTGGAACAATCACCACAAATCACATGACAGTAGTCAAGTCATGCATTTGCATGACTGTCAAGGAATCATGTAATATTACATCAGACTTCTCTTCTGACCTTCCATCATCTGTTGTCAAACTTCTGCTGCAATCCATATTCAACAACACTGGAGGAGAAGTTGTAATCAACCAAAATGGCAAACGTGAGTTGTTGGGCACTCCCACTGAGACTGCATTGTTAGAGTTTGGTCTCTCACTTGGTGGAGATTTTCAGGCTGAAAGACAGGCAAGTAAACTTATTAAAGTTGAGCCGTTCAACTCTTTGAAAAAGCGGATGGGTGTTGTCCTACAATTTCCTGAAGGTGGCTACCGTGCGCACACCAAAGGGGCTTCAGAAATAGTATTAGCTGCTTGTGACAAGGTGATCAACTCGAGTGGTGAGGTTGTTCCTTTAGATGAATCTTCTATCAAGCATCTCAATGTTATTATCAATCAATTTGCTGGTGAAGCTCTCCGAACACTTTGCCTTGCCTATATGGAACTGGAAAATGGATTCGCTGTCAATGACCCTATTCCAGTTTCTGGTTATACCTGTATAGGTATTGTGGGTATTAAAGATCCTGTTCGTCCTGGCGTGAAGGAGTCTGTTGCAGTTTGTCGTTCAGCTGGTATAACTGTACGAATGGTTACCGGCGACAATATCAATACTGCAAAAGCTATTGCTAGGGAATGTGGAATTCTCACAGATGATGGTATAGCCATTGAGGGTCCAGATTTCAGAGAGAAGAGTCAAGAGGAACTGCTTCAAATTATTCCGAAAATTCAGGTGATGGCTCGATCTTCACCTCTAGATAAGCACACTCTGGTCAAGCATTTGCGGACCACCTTTGATGAAGTAGTTGCAGTTACTGGTGATGGCACAAACGATGCTCCCGCACTTCACGAAGCAGATATTGGACTGGCAATGGGCATCGCTGGAACTGAGGCAAGCCCAAAGCTTCTTGTTTTCCTTCTTCTGCTAACCTTTTGGTGTGAAAATGTTGCTTCAGGTAGTGCTCCTCTTACTGCAGTCCAACTCTTGTGGGTGAACATGATTATGGATACACTTGGAGCATTGGCTCTCGCTACTGAGCCTCCAACTGATGACTTGATGAAGCGGTTACCCGTTGGGAGAAGAGGAAGTTTTATCAGCAATGTCATGTGGAGAAATATCTTGGGCCAGTCCTTTTATCAGTTCTCAGTCATATGGTTTTTACAGGCCAAAGGGAAATCAGTTTTCGGTCTCGACGGTCCTGATTCTGATCTGATACTGAATACTCTCATCTTCAATTCATTCGTGTTCTGTCAGATTTTCAACGAAATAAGTTCAAGGGAGATGGACAAAATCGACGTGTTCAAAGGCATACTTGATAACTATGTGTTTGTTGCTGTCCTTGGTTCCACCGTCATGTTCCAAATAATCATCATCGAATTCCTGGGAACATTTGCAAGCACAACTCCTCTGAGTATGTCGCAGTGGGCGTTCAGCTTGGTGATTGGATTTCTAGGGATGCCAATTGCTGCTTTCTTGAAGACGATTGCAGTATAA 3024 43.32 MERFLEENFGGVKPKNSSEEVLQRWRELCGVVKNPKRRFRFTANLSKRGEAAAMRQNNQEKLRIAVLVSKAAFQFIQGEQFWNFDKEMWLFVVVFSYLMEFVMVCLGVQPSDYTVPEEVKAAGFHICADELGSVVEGHDTKKFKYHGGVEGIAQKLCTSTTNGLNGDADALNHRQGIYGVNKFAESEQRSFFVFVWEALQDMTLMILGLCAFVSLVVGIITEGWPHGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYDLLPGDIVHLSIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVTAENPYLLSGTKVQDGSCKMMVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVITFAVLVQGMLSRKIREGTHWSWTGDDALEILEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTITTNHMTVVKSCICMTVKESCNITSDFSSDLPSSVVKLLLQSIFNNTGGEVVINQNGKRELLGTPTETALLEFGLSLGGDFQAERQASKLIKVEPFNSLKKRMGVVLQFPEGGYRAHTKGASEIVLAACDKVINSSGEVVPLDESSIKHLNVIINQFAGEALRTLCLAYMELENGFAVNDPIPVSGYTCIGIVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPDFREKSQEELLQIIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAPALHEADIGLAMGIAGTEASPKLLVFLLLLTFWCENVASGSAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKRLPVGRRGSFISNVMWRNILGQSFYQFSVIWFLQAKGKSVFGLDGPDSDLILNTLIFNSFVFCQIFNEISSREMDKIDVFKGILDNYVFVAVLGSTVMFQIIIIEFLGTFASTTPLSMSQWAFSLVIGFLGMPIAAFLKTIAV 1007
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4271327 4276299 + MELO3C007636.2.1 Cme08g00653 334916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00653 1007 Gene3D - 267 346 - -
Cme08g00653 1007 SFLD C1.7: P-type atpase like 464 809 - -
Cme08g00653 1007 SUPERFAMILY HAD-like 470 808 IPR036412 -
Cme08g00653 1007 Pfam Cation transporter/ATPase, N-terminus 145 214 IPR004014 -
Cme08g00653 1007 SUPERFAMILY Calcium ATPase, transduction domain A 268 362 IPR008250 -
Cme08g00653 1007 Gene3D - 347 533 - -
Cme08g00653 1007 PRINTS Sodium/potassium-transporting ATPase signature 604 622 - -
Cme08g00653 1007 PRINTS Sodium/potassium-transporting ATPase signature 232 252 - -
Cme08g00653 1007 PRINTS Sodium/potassium-transporting ATPase signature 475 496 - -
Cme08g00653 1007 Pfam Cation transport ATPase (P-type) 542 620 - -
Cme08g00653 1007 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 488 691 IPR023299 GO:0000166
Cme08g00653 1007 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 141 808 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cme08g00653 1007 Pfam E1-E2 ATPase 266 460 - -
Cme08g00653 1007 PANTHER CATION TRANSPORTING ATPASE 92 808 - -
Cme08g00653 1007 PANTHER CATION TRANSPORTING ATPASE 824 1006 - -
Cme08g00653 1007 Gene3D - 811 1007 - -
Cme08g00653 1007 Pfam haloacid dehalogenase-like hydrolase 678 796 - -
Cme08g00653 1007 PANTHER CALCIUM-TRANSPORTING ATPASE 1 824 1006 - -
Cme08g00653 1007 PRINTS P-type cation-transporting ATPase superfamily signature 782 801 - -
Cme08g00653 1007 PRINTS P-type cation-transporting ATPase superfamily signature 482 496 - -
Cme08g00653 1007 PRINTS P-type cation-transporting ATPase superfamily signature 701 711 - -
Cme08g00653 1007 PRINTS P-type cation-transporting ATPase superfamily signature 679 690 - -
Cme08g00653 1007 PRINTS P-type cation-transporting ATPase superfamily signature 313 327 - -
Cme08g00653 1007 Gene3D - 679 810 IPR023214 -
Cme08g00653 1007 Gene3D - 17 77 - -
Cme08g00653 1007 PANTHER CALCIUM-TRANSPORTING ATPASE 1 92 808 - -
Cme08g00653 1007 SUPERFAMILY Calcium ATPase, transmembrane domain M 145 1005 IPR023298 -
Cme08g00653 1007 Gene3D - 536 678 IPR023299 GO:0000166
Cme08g00653 1007 SFLD p-type atpase 464 809 IPR044492 -
Cme08g00653 1007 Pfam Cation transporting ATPase, C-terminus 831 1004 IPR006068 -
Cme08g00653 1007 PANTHER CALCIUM-TRANSPORTING ATPASE 1 5 81 - -
Cme08g00653 1007 ProSitePatterns E1-E2 ATPases phosphorylation site. 484 490 IPR018303 -
Cme08g00653 1007 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 49 IPR024750 GO:0005516
Cme08g00653 1007 PANTHER CATION TRANSPORTING ATPASE 5 81 - -
Cme08g00653 1007 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 234 404 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme08g00653 1007 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 421 504 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00540 Cme-Chr1:4044921 Cme08g00653 Cme-Chr8:4271327 2.53E-50 transposed
Cme01g02025 Cme-Chr1:28940364 Cme08g00653 Cme-Chr8:4271327 0 transposed
Cme01g02742 Cme-Chr1:34598876 Cme08g00653 Cme-Chr8:4271327 0 transposed
Cme04g02051 Cme-Chr4:27914494 Cme08g00653 Cme-Chr8:4271327 0 transposed
Cme05g01258 Cme-Chr5:20368424 Cme08g00653 Cme-Chr8:4271327 0 transposed
Cme05g01739 Cme-Chr5:26408350 Cme08g00653 Cme-Chr8:4271327 1.03E-17 transposed
Cme05g01776 Cme-Chr5:26749671 Cme08g00653 Cme-Chr8:4271327 0 transposed
Cme09g01069 Cme-Chr9:14953029 Cme08g00653 Cme-Chr8:4271327 0 transposed
Cme12g00230 Cme-Chr12:2597422 Cme08g00653 Cme-Chr8:4271327 3.60E-77 transposed
Cme03g02114 Cme-Chr3:28374166 Cme08g00653 Cme-Chr8:4271327 4.70E-10 wgd
Cme07g00287 Cme-Chr7:1857193 Cme08g00653 Cme-Chr8:4271327 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00653 K01537 - csv:101212315 1802.72