Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00656 ATGGGTGCCCCTAAGCAGAAATGGACAGCTGAAGAAGAAGCTGCCCTTAAGGCAGGAGTGATCAAGCATGGAGCAGGAAAATGGCGCACAATACTCACAGATCCTGAATTCAGCTCAATTTTGCATCAACGCTCAAATGTGGATCTCAAGGATAAGTGGAGAAATATAAATGTTACTGCAATATGGGGGTCTAGGCAAAAGGCTAAGCTCGCACTTAAGAAGAATTCTATGGCCATAAAACATCATGATAGTCCTGTGCCTGTAAGCACTGTGCTTCCGAATGAGGAGATTGTCGACGCTAAGCCGCTTGCAATTTCAAATGGAACAAGTCGCTCTAATGGTCCAAAAGAGCCACTAGCAAGATTGGACAAACTTATATCAGAGGCAATTAACAACCTAAAGGAGCCAAGGGGTTCTGACCGAGCTGCAATTGCTATGTACATAGAGGAGCATTACTGGGCCCCGCCAAACCTTAAAAAACTTCTTTCAACAAAATTAAAGCATATGACTGCAAATGGAAAGTTGATAAAGGTAAAGCATAAGTACAGAATTGCACCAAATTCTCCCTTACCTGGAAGAAGAAATGCTCCATTGTTACTCCTTGAGGACAAGCAGACGGATTCTTCAAAAACCGAGAAGAGTGAAGTCAAAATTATCACTAAATCCCAGGTTGACTTGGAACTTTCAAAGATGAAGGTAATGACTGCGGAGGAGGCAGCTATAGCTGCTGCACGTGCAGTAGCTGAGGCAGAGGCTGCCATTGCAGAGGCTGAAAGGGCAGCAAGAGAAGCAGAACAAGCAGAGGCTGAAGCTGAAACAGCACAAGTTTTTGCTGAAGCAGCAATGAAGGCATTGGAGTGCAGAACATTCCCTAATAGAAGTCCTATTCAGAAAGTTCTCCTCCAAGATAATAAAACTTTGCAATAA 927 43.58 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNSMAIKHHDSPVPVSTVLPNEEIVDAKPLAISNGTSRSNGPKEPLARLDKLISEAINNLKEPRGSDRAAIAMYIEEHYWAPPNLKKLLSTKLKHMTANGKLIKVKHKYRIAPNSPLPGRRNAPLLLLEDKQTDSSKTEKSEVKIITKSQVDLELSKMKVMTAEEAAIAAARAVAEAEAAIAEAERAAREAEQAEAEAETAQVFAEAAMKALECRTFPNRSPIQKVLLQDNKTLQ 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4284104 4290616 - MELO3C007640.2.1 Cme08g00656 334919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00656 308 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Cme08g00656 308 PANTHER SINGLE MYB HISTONE 4 1 289 IPR044597 GO:0003691
Cme08g00656 308 PANTHER TELOMERE REPEAT-BINDING FACTOR 2 1 289 - -
Cme08g00656 308 SMART h15plus2 116 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cme08g00656 308 Gene3D - 118 191 IPR036388 -
Cme08g00656 308 Pfam linker histone H1 and H5 family 123 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cme08g00656 308 CDD SANT_TRF 6 57 - -
Cme08g00656 308 SUPERFAMILY Winged helix DNA-binding domain 116 195 IPR036390 -
Cme08g00656 308 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cme08g00656 308 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Cme08g00656 308 SMART sant 4 59 IPR001005 -
Cme08g00656 308 Gene3D - 2 59 - -
Cme08g00656 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Cme08g00656 308 Coils Coil 240 277 - -
Cme08g00656 308 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00656 Cme-Chr8:4284104 Cme08g00912 Cme-Chr8:6015477 2.26E-09 dispersed
Cme04g01227 Cme-Chr4:17009275 Cme08g00656 Cme-Chr8:4284104 6.94E-11 transposed
Cme11g01449 Cme-Chr11:21456985 Cme08g00656 Cme-Chr8:4284104 5.80E-07 transposed
Cme07g02198 Cme-Chr7:26234995 Cme08g00656 Cme-Chr8:4284104 3.99E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41794 PF00538 Linker_histone 3.80E-11 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00656 K09422 - csv:101202913 519.62