Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00656 ATGGGTGCCCCTAAGCAGAAATGGACAGCTGAAGAAGAAGCTGCCCTTAAGGCAGGAGTGATCAAGCATGGAGCAGGAAAATGGCGCACAATACTCACAGATCCTGAATTCAGCTCAATTTTGCATCAACGCTCAAATGTGGATCTCAAGGATAAGTGGAGAAATATAAATGTTACTGCAATATGGGGGTCTAGGCAAAAGGCTAAGCTCGCACTTAAGAAGAATTCTATGGCCATAAAACATCATGATAGTCCTGTGCCTGTAAGCACTGTGCTTCCGAATGAGGAGATTGTCGACGCTAAGCCGCTTGCAATTTCAAATGGAACAAGTCGCTCTAATGGTCCAAAAGAGCCACTAGCAAGATTGGACAAACTTATATCAGAGGCAATTAACAACCTAAAGGAGCCAAGGGGTTCTGACCGAGCTGCAATTGCTATGTACATAGAGGAGCATTACTGGGCCCCGCCAAACCTTAAAAAACTTCTTTCAACAAAATTAAAGCATATGACTGCAAATGGAAAGTTGATAAAGGTAAAGCATAAGTACAGAATTGCACCAAATTCTCCCTTACCTGGAAGAAGAAATGCTCCATTGTTACTCCTTGAGGACAAGCAGACGGATTCTTCAAAAACCGAGAAGAGTGAAGTCAAAATTATCACTAAATCCCAGGTTGACTTGGAACTTTCAAAGATGAAGGTAATGACTGCGGAGGAGGCAGCTATAGCTGCTGCACGTGCAGTAGCTGAGGCAGAGGCTGCCATTGCAGAGGCTGAAAGGGCAGCAAGAGAAGCAGAACAAGCAGAGGCTGAAGCTGAAACAGCACAAGTTTTTGCTGAAGCAGCAATGAAGGCATTGGAGTGCAGAACATTCCCTAATAGAAGTCCTATTCAGAAAGTTCTCCTCCAAGATAATAAAACTTTGCAATAA 927 43.58 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNSMAIKHHDSPVPVSTVLPNEEIVDAKPLAISNGTSRSNGPKEPLARLDKLISEAINNLKEPRGSDRAAIAMYIEEHYWAPPNLKKLLSTKLKHMTANGKLIKVKHKYRIAPNSPLPGRRNAPLLLLEDKQTDSSKTEKSEVKIITKSQVDLELSKMKVMTAEEAAIAAARAVAEAEAAIAEAERAAREAEQAEAEAETAQVFAEAAMKALECRTFPNRSPIQKVLLQDNKTLQ 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4284104 4290616 - MELO3C007640.2.1 Cme08g00656 334919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00656 308 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Cme08g00656 308 PANTHER SINGLE MYB HISTONE 4 1 289 IPR044597 GO:0003691
Cme08g00656 308 PANTHER TELOMERE REPEAT-BINDING FACTOR 2 1 289 - -
Cme08g00656 308 SMART h15plus2 116 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cme08g00656 308 Gene3D - 118 191 IPR036388 -
Cme08g00656 308 Pfam linker histone H1 and H5 family 123 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cme08g00656 308 CDD SANT_TRF 6 57 - -
Cme08g00656 308 SUPERFAMILY Winged helix DNA-binding domain 116 195 IPR036390 -
Cme08g00656 308 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cme08g00656 308 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Cme08g00656 308 SMART sant 4 59 IPR001005 -
Cme08g00656 308 Gene3D - 2 59 - -
Cme08g00656 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Cme08g00656 308 Coils Coil 240 277 - -
Cme08g00656 308 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00656 K09422 MYBP; transcription factor MYB, plant - csv:101202913 519.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00656 Cme-Chr8:4284104 Cme08g00912 Cme-Chr8:6015477 2.26E-09 dispersed
Cme04g01227 Cme-Chr4:17009275 Cme08g00656 Cme-Chr8:4284104 6.94E-11 transposed
Cme11g01449 Cme-Chr11:21456985 Cme08g00656 Cme-Chr8:4284104 5.80E-07 transposed
Cme07g02198 Cme-Chr7:26234995 Cme08g00656 Cme-Chr8:4284104 3.99E-41 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme08g00656 . 1 245 Single Myb Histone (SMH) Gene Family AT1G49950 52.2 3.4e-61 232.3
Cme07g02198 . 2 284 Single Myb Histone (SMH) Gene Family AT1G49950 54.1 1.3e-49 193.7
Cme08g00656 . 1 245 Single Myb Histone (SMH) Gene Family AT5G67580 52.8 1.1e-64 243.8
Cme08g00656 . 1 245 Single Myb Histone (SMH) Gene Family AT3G49850 50.8 1.9e-56 216.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003466 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 4 4 0 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41794 PF00538 Linker_histone 3.80E-11 CL0123 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g00656 Cme_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0