Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00672 ATGAATAATGTTAATGGCAACAACTGTAACTGGCTAGGCTTCTCTGTCTCCCCTAACGTTAACATGGAGCTTTCTTCTTCTGCTGCTACTTCTGTCTCCCCTTCAATTCCTGCAAATCTTTTTCACTCCCCATCTCAGTTTAACTATGGCATTTGCTATGGTGTTGATGGAGAACATGGTGGCTTTTATTCACCATTGTCTGCCATGCCACTCAAGTCAGATGGTTCAATTTGTTCCATGGAAGCTCTCAGCAGGCAACATCCACAAGTGGTGAGTAGCACTACTCCAAAACTAGAGGATTTCTTTGGTGGTGCAACTATGGGGTCCCATCACTATGAGAGTAATGACAGGGAAGCTATGGCTCTCAGTCTAGACAGCATATTTTGCCATCAAAACCCAACGCACGAGCCCAACAACCAATCCTTTGCACATTTCTCATCCTTGAGAAGCCGTGAACTGATGCTTCAAGACTCGAAGGTAATCCTGCCTGATGGGTGCAATCTGCAGCAGCAGCAACACCCAGCAGTAGCCCAGAGTGATATTTCTGGTATGAAGAATTGGGCCGTTCCTAGAAATTATGCTGCCACTAACAATGGTTCGTTCGAGCAGAAGATGGTTAGTTGCATGAGTGAAAATGGTGGTGAATCTGGTTCTATTAATGCCATGGCTTATGGAGATTTGCAGTCATTGAGCTTGTCTATGACTATGAGCCCCAGCTCTCAGTCTAGCTGTGTCACAGCCACGCAGCATGTCTCACCTGCTATGACTGACTGTTCTGCTATGGATACAAAGAAAAGAGGCCATGAGAAGGTTGATCAAAAGCAAATTGTTCATAGGAAGTCTTTAGATACCTTCGGACAGAGAACCTCACAATATAGAGGGGTTACAAGGCACAGATGGACGGGTAGGTATGAAGCACATTTATGGGACAACAGTTGCAAGAAAGAAGGTCAAAGCAGGAAGGGAAGGCAAGTTTTTTTAGGAGGTTATGATATGGAAGAAAAAGCCGCTAGAGCTTATGATCTTGCTGCACTCAAGTATTGGGGACCCTCCACCCACATTAACTTTCCTTTGGAAAACTATCAGAAAGAATTAGAGGAAATGAAAAACATGAGCAGGCAGGAATATGTTGCTCACCTGAGAAGAAGAAGCAGTGGGTTCTCAAGAGGGGCCTCGATATACCGAGGTGTAACAAGACATCATCAACATGGAAGATGGCAGGCTCGTATTGGCCGGGTTGCTGGTAACAAAGATCTCTATCTTGGGACATTCAGTACTCAAGAGGAAGCAGCTGAGGCCTATGACATAGCAGCCATAAAATTTCGAGGAATGAATGCTGTTACTAATTTCGATATCACAAGGTATGATGTGGAGCGGATTATTGCAAGCAGTACCCTCCTAAGTGGCGATCTAGCTAAGAGAAAGCCAGAGTTTGACAATGAATCACTTAGACAAAGCCCTTCTACACACAACAGCAATTCAGAAGCTATGCCTCTGCCCTCACAGAGTAGTAGTCAAAGTGAATCAGACTGGAAGATGGCTCTTTATCAGTCCTCACAGCAGCTCATTCCAAAGCCACGAATGTTGTCTGCGATAAACGATGATGGATCACAACTTGGAGTCGAAGATTCTGCCAGAATGGGAGCTCATTTCTCCAATGCATCTTCAATGGTTACTAGCTGCAGCTTGAGCAGCTCAAGGGAGGAGAGTCCAGACAAGACAAGCCTTTCGATGGTGTTCGGAATGCCTCAATCGACATCTAAGCCGTTTGCTACCTCGGCTAATAATATGAACACCTCCTGGATTGCATCTGCCCAGCAGATAAGGGCAGCAAATTGTATGAGCCAGTTGCCAGTTTTTGCTGCCTGGACTGATACTTAA 1881 45.19 MNNVNGNNCNWLGFSVSPNVNMELSSSAATSVSPSIPANLFHSPSQFNYGICYGVDGEHGGFYSPLSAMPLKSDGSICSMEALSRQHPQVVSSTTPKLEDFFGGATMGSHHYESNDREAMALSLDSIFCHQNPTHEPNNQSFAHFSSLRSRELMLQDSKVILPDGCNLQQQQHPAVAQSDISGMKNWAVPRNYAATNNGSFEQKMVSCMSENGGESGSINAMAYGDLQSLSLSMTMSPSSQSSCVTATQHVSPAMTDCSAMDTKKRGHEKVDQKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVFLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQKELEEMKNMSRQEYVAHLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGMNAVTNFDITRYDVERIIASSTLLSGDLAKRKPEFDNESLRQSPSTHNSNSEAMPLPSQSSSQSESDWKMALYQSSQQLIPKPRMLSAINDDGSQLGVEDSARMGAHFSNASSMVTSCSLSSSREESPDKTSLSMVFGMPQSTSKPFATSANNMNTSWIASAQQIRAANCMSQLPVFAAWTDT 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4410391 4414216 + MELO3C007657.2.1 Cme08g00672 334935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00672 626 MobiDBLite consensus disorder prediction 482 510 - -
Cme08g00672 626 PRINTS Ethylene responsive element binding protein signature 433 453 IPR001471 GO:0003700|GO:0006355
Cme08g00672 626 PRINTS Ethylene responsive element binding protein signature 292 303 IPR001471 GO:0003700|GO:0006355
Cme08g00672 626 CDD AP2 290 357 IPR001471 GO:0003700|GO:0006355
Cme08g00672 626 MobiDBLite consensus disorder prediction 477 510 - -
Cme08g00672 626 ProSiteProfiles AP2/ERF domain profile. 393 451 IPR001471 GO:0003700|GO:0006355
Cme08g00672 626 ProSiteProfiles AP2/ERF domain profile. 291 357 IPR001471 GO:0003700|GO:0006355
Cme08g00672 626 SUPERFAMILY DNA-binding domain 290 359 IPR016177 GO:0003677
Cme08g00672 626 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 624 - -
Cme08g00672 626 Coils Coil 358 378 - -
Cme08g00672 626 CDD AP2 392 453 IPR001471 GO:0003700|GO:0006355
Cme08g00672 626 Gene3D AP2/ERF domain 393 453 IPR036955 GO:0003700|GO:0006355
Cme08g00672 626 Gene3D AP2/ERF domain 290 359 IPR036955 GO:0003700|GO:0006355
Cme08g00672 626 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 8 624 - -
Cme08g00672 626 SUPERFAMILY DNA-binding domain 392 452 IPR016177 GO:0003677
Cme08g00672 626 Pfam AP2 domain 291 349 IPR001471 GO:0003700|GO:0006355
Cme08g00672 626 Pfam AP2 domain 393 443 IPR001471 GO:0003700|GO:0006355
Cme08g00672 626 SMART rav1_2 291 363 IPR001471 GO:0003700|GO:0006355
Cme08g00672 626 SMART rav1_2 393 457 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g01754 Cme-Chr11:25705936 Cme08g00672 Cme-Chr8:4410391 7.82E-12 dispersed
Cme01g02536 Cme-Chr1:33317965 Cme08g00672 Cme-Chr8:4410391 3.60E-81 transposed
Cme02g01029 Cme-Chr2:15244527 Cme08g00672 Cme-Chr8:4410391 1.14E-09 transposed
Cme02g01576 Cme-Chr2:22818754 Cme08g00672 Cme-Chr8:4410391 1.92E-09 transposed
Cme03g01289 Cme-Chr3:22464069 Cme08g00672 Cme-Chr8:4410391 5.18E-11 transposed
Cme04g01293 Cme-Chr4:18125009 Cme08g00672 Cme-Chr8:4410391 1.61E-09 transposed
Cme04g02058 Cme-Chr4:27963717 Cme08g00672 Cme-Chr8:4410391 1.06E-08 transposed
Cme05g01005 Cme-Chr5:14308733 Cme08g00672 Cme-Chr8:4410391 9.79E-119 transposed
Cme06g02230 Cme-Chr6:28999704 Cme08g00672 Cme-Chr8:4410391 3.25E-22 transposed
Cme10g00187 Cme-Chr10:1264092 Cme08g00672 Cme-Chr8:4410391 5.74E-11 transposed
Cme03g02125 Cme-Chr3:28479280 Cme08g00672 Cme-Chr8:4410391 1.03E-09 wgd
Cme07g00259 Cme-Chr7:1695945 Cme08g00672 Cme-Chr8:4410391 1.81E-169 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41798 PF00847 AP2 2.20E-12 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00672 K09285 - csv:101203323 1191.41