Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme08g00681 | ATGGGTTTTGATGATCTTTCTAATACAAGCCTTCTTCTTGGTTTGGGATTAACACTTCCCTCTAATCCTCCTCATCTAATTTCTCAAAAGCCCAAGAAGTCACTCGATTTGCTCTGTTTTCCCCCTCCTGAATCCGAGCCCTCCTTAACTTTGGGGCTTTCCACCGTCGATACCTACCCTTCTGAAACCCCTGATTTGTCTCGCCAACCCTCGCCTCACAGTGCGATTTCTTCCTTCTCCGGCAGCAGGGTCAAACGTGAAAGAGACGTTTCCGGTGAAGAGATTGAAGAGGAGAAAGCTTCTTCTCGTGTCAGCGATGAAGATGAAGATGGTTCTAATGCTAGAAAAAAACTTAGGCTAACTAAAGAACAATCTGCCCTTTTGGAGGAGAGCTTTAAACTTCACAGTACTCTTAACCCTAAGCAAAAGCAAGCCTTAGCCAAAGAGTTAAATCTCCGGCCTCGACAAGTTGAAGTTTGGTTCCAGAATAGGAGAGCCAGGACAAAGCTTAAGCAAACAGAAGTAGATTGCGAGTTTCTAAAGAGATGCTGCGAAACGCTAACGGACGAAAACAGGAGGCTACAAAAAGAGCTACAAGAACTGAAAGCCTTGAAACTAGCACAGCCTCTGTTCATGCAAATGCCGGCGGCGACACTCACTATGTGCCCGTCTTGTGAGCGGATCGGCGGTGGCGCCGCCACGGTTAACGGCGACGGAAACTCGAAGGGCCCATTCTCGATGGCTACCAAGCCCCGGTTCTACAAAGCCTTCACCAAGCCTTCGGCTGCTTGCTAG | 795 | 48.3 | MGFDDLSNTSLLLGLGLTLPSNPPHLISQKPKKSLDLLCFPPPESEPSLTLGLSTVDTYPSETPDLSRQPSPHSAISSFSGSRVKRERDVSGEEIEEEKASSRVSDEDEDGSNARKKLRLTKEQSALLEESFKLHSTLNPKQKQALAKELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTDENRRLQKELQELKALKLAQPLFMQMPAATLTMCPSCERIGGGAATVNGDGNSKGPFSMATKPRFYKAFTKPSAAC | 264 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 4509619 | 4510992 | + | MELO3C007666.2.1 | Cme08g00681 | 334944 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme08g00681 | 264 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22 | 1 | 264 | - | - | |
| Cme08g00681 | 264 | MobiDBLite | consensus disorder prediction | 48 | 81 | - | - | |
| Cme08g00681 | 264 | Pfam | Homeodomain | 115 | 169 | IPR001356 | GO:0003677 | |
| Cme08g00681 | 264 | ProSitePatterns | 'Homeobox' domain signature. | 146 | 169 | IPR017970 | GO:0000981|GO:0006355 | |
| Cme08g00681 | 264 | PANTHER | - | 1 | 264 | - | - | |
| Cme08g00681 | 264 | SMART | halz | 171 | 214 | IPR003106 | GO:0006355|GO:0043565 | |
| Cme08g00681 | 264 | MobiDBLite | consensus disorder prediction | 38 | 118 | - | - | |
| Cme08g00681 | 264 | SUPERFAMILY | Homeodomain-like | 106 | 172 | IPR009057 | - | |
| Cme08g00681 | 264 | SMART | HOX_1 | 113 | 175 | IPR001356 | GO:0003677 | |
| Cme08g00681 | 264 | Pfam | Homeobox associated leucine zipper | 171 | 205 | IPR003106 | GO:0006355|GO:0043565 | |
| Cme08g00681 | 264 | MobiDBLite | consensus disorder prediction | 82 | 118 | - | - | |
| Cme08g00681 | 264 | ProSiteProfiles | 'Homeobox' domain profile. | 111 | 171 | IPR001356 | GO:0003677 | |
| Cme08g00681 | 264 | Gene3D | - | 108 | 176 | - | - | |
| Cme08g00681 | 264 | Coils | Coil | 177 | 207 | - | - | |
| Cme08g00681 | 264 | CDD | homeodomain | 115 | 172 | IPR001356 | GO:0003677 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme01g02508 | Cme-Chr1:33076673 | Cme08g00681 | Cme-Chr8:4509619 | 6.31E-75 | dispersed | |
| Cme04g02253 | Cme-Chr4:29613050 | Cme08g00681 | Cme-Chr8:4509619 | 2.77E-72 | dispersed | |
| Cme02g01633 | Cme-Chr2:23497078 | Cme08g00681 | Cme-Chr8:4509619 | 2.10E-59 | transposed | |
| Cme06g01725 | Cme-Chr6:19552711 | Cme08g00681 | Cme-Chr8:4509619 | 5.71E-87 | transposed | |
| Cme06g02551 | Cme-Chr6:32504663 | Cme08g00681 | Cme-Chr8:4509619 | 4.77E-66 | transposed | |
| Cme07g00249 | Cme-Chr7:1612315 | Cme08g00681 | Cme-Chr8:4509619 | 7.05E-16 | transposed | |
| Cme09g01407 | Cme-Chr9:19255000 | Cme08g00681 | Cme-Chr8:4509619 | 9.27E-52 | transposed | |
| Cme10g01542 | Cme-Chr10:19729946 | Cme08g00681 | Cme-Chr8:4509619 | 5.98E-24 | transposed | |
| Cme07g00248 | Cme-Chr7:1611018 | Cme08g00681 | Cme-Chr8:4509619 | 3.06E-27 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 41800 | PF00046 | Homeodomain | 3.10E-16 | CL0123 | Cme | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme08g00681 | K09338 | - | csv:101218782 | 486.493 |