Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00688 ATGAGTGTCACCATTCAACCTTCAAATATTATATGCAAACAAATATGGCTTCTTCTTCTTGTTTTTCAGATTCTCCATTTTCACTTTTCCCCTTCTTTCTCTGCCTTCCTTCCCGAATCCCAAGCTCTTCTCTCTCTCAAATCCTCCATCTCTGACGACCCTCATTCTTCTCTCTCCTCCTGGAACCCTGCCGCCGTCGCCACCCACTGTTCCTGGCTCGGTGTCACATGTGACTCCCATCGCCACGTCGTTGCCTTAGACCTCTCTTCCCTTGACCTTACCGCCACCCTTTCCCCTCACATTGCCTCTCTTCGCTTTCTCACTAATGTTTCCTTCGGCCTCAACAAATTTTCCGGCGGAATCCCACCGGAGATTGCCTCCCTCTCTTCTCTCCAGCTTCTTAATCTCTCTAGTAACGTCCTTAATGGGTCCATTCCTAGCGAGTTTTCGCGGCTCAAGAACTTGCAGGTTCTTGATGTTTATAATAATAATCTGACCGGTGAATTCCCCAGAGTGGTTACTGAAATGCCCAACCTCCGCTATTTGCATCTTGGGGGTAATTTCTTTACCGGTCGGATTCCTCCGGAGGTTGGACGGTTGCAGTTCTTGGAGTTTCTGGCGATTCACGGCAATGACCTTGAAGGTCCCATACCGCAGACTATCGGAAACTTGACGAAGCTTCGGGAGCTCTTCATTGGTTACTACAACACATTTGTTGGTGGAATACCGGCGACGATAGGGAATTTGTCGGAGTTAGTTCGGTTGGATGCCGCGAGCTGTGGGTTGAGTGGAAAGATTCCGCGGGAGCTCGGAAAGTTACAGAAGCTCACTTATCTGTTCCTTCAACAAAATGCTCTGTCTGGTCCTTTGATGGAGCTTGGAGGATTGAAGAGCATAGAAGCGTTGGATATATCATGCAATATGCTTGTTGGTGAAATACCCATCTCTTTTGCAGTGTTTAAGAACTTGAGGCTATTGCATCTTTTCGACAACAAGCTCTCCGGAGAGATTCCGGGATTCATGGCCGACCTCCCTAAGCTGGAGATATTGCAATTATGGAACAACAATTTCACTGGTTCGATCCCTCGAAATTTGGGGAAGAACGGAATGCTTCGGACTCTCGACCTTGCTTTCAACCATCTGACAGGTACGATTCCTCCTGAAGTCTGCCATGGGAATAAGCTTGAAGTTTTGATCGCCATGGGCAACTCCTTGTCTGGTTTGATTCCAGAATCGTTGGGGAACTGTATTTCACTTAAACGTATACTTCTGTGGGGCAACGCTCTTAATGGATCAATTCCAAAGAGGCTTTTGGGTTTGCCAAACATCACTCAAATTGATTTGCATGACAATTTTCTCTCTGGTGAACTTCCGATTACCAATTCAGTCTCAGCTAATCTTCTTCAGATAAGTCTATCGAATAATATGCTCTCTGGATCCTTGCCACCAACCATCGGCAGCCTTGTGGCTGTCCAGAAGCTTCTTCTTGATCGGAATAAGTTTTCTGGTCAGATTCCTTCGAGTATTGGGAGATTACAGCAACTATCTCGGATAAATTTCAGCCAGAATAAGTTCTCTGGTTCAATTGTGGCGGAGATAAGTGAGTGTAAACACTTGATATTTCTTGATCTTAGTGGAAATGAGCTTTCTGGTGAAATTCCTAACCATATTACCAACATGAAATTATTGAATTATATGAATCTCTCAAGAAACCATTTAGTTGGGCCTATTCCTGCTTCCATAGTTAATATGCAGAGCTTAACCTCTGTTGATTTTTCATATAACAATCTCTCTGGTTTGGTTCTGGGAACTGGGCAATTTGGTTACTTCAATTACACATCATTTTTAGGCAATCCTTATCTCTGTGGACCATATTTGGGGCCTTGTAAAGATGGGATTCTTGCTAGCAATCACCAAGAACATATGAAAGGATCTCTCTCAACTCCTCTCAGGCTCCTGCTAGCTTTTGGGTTTTTCTTTTGTTTAGTTGCAGTGACAGTTGGATTGATCTTCAAAGTTGGGTGGTTCAAGAGAGCAAGGGAGTCTAGAGGATGGAGATTAACAGCCTTCCAACGGCTTGGTTTCTCGGTTGATGAGATCTTGGAATGCCTTAAAAAGGAAAATCTTATTGCAAAGGGAGGTTATGGCACAGTATATACAGGAGTCATGCCTAGTGGTGATCAGATCACTGTGAAAAGGCTTCCAAAGATGAGCAATGGGTGTACTCGTGACAACAAATTCGATGCTGAGATACAAGCTCTTGGGAGGATTCGACACCGTCACATCGTTAGGTTATTGGGTCTCTGTTCAAACCACGAAACTAATCTTTTGGTATTTGAGTACATGCCTAATGGTAGTCTCTATGAGGTTCTTCATGGCAAGAAAGGAGGTCACTTGCTCTGGGAGACAAGGTACAAGATAGCCATTGGAACTGCGAATGGACTTTGCTATCTTCACCACCATTGCTCACCGCCCATTGTTCATCGAAATGTGAATTCGAACAACATTATGCTTGACACCAACTTTGATGCTCAGATTGCTAATTCCGGGCTTGCGAAGTTCTTACAAGATTCAGGGGCATCGGATATTTCAGCTACTGAGCCAGAACACACCTACTCGCAGAATGTCGACGAGAAATGGGATGTATATAGCTTCGGTGTCGTCCTCTTGGAACTTGTTAGCGGTAGGAATCCAGATGTAGAACTAAGCAACAGTGTCGACTTAGTTCAATGGGTTAGAAACATGACAGACACGAAAAAGGAAGAAATACATAAAATAGTCGATCAAAGACTCTCCTCAGTCCCCCTGGAAGAAGTGATACACGTACTCAATGTCGCCATGCTGTGCACTGAAGAAGAGGCTCCAAAGCGTCCAACGATGCGGGAAGTTGTCCGGATCTTAACCGAGCATCAGCAACAATAA 2922 44.63 MSVTIQPSNIICKQIWLLLLVFQILHFHFSPSFSAFLPESQALLSLKSSISDDPHSSLSSWNPAAVATHCSWLGVTCDSHRHVVALDLSSLDLTATLSPHIASLRFLTNVSFGLNKFSGGIPPEIASLSSLQLLNLSSNVLNGSIPSEFSRLKNLQVLDVYNNNLTGEFPRVVTEMPNLRYLHLGGNFFTGRIPPEVGRLQFLEFLAIHGNDLEGPIPQTIGNLTKLRELFIGYYNTFVGGIPATIGNLSELVRLDAASCGLSGKIPRELGKLQKLTYLFLQQNALSGPLMELGGLKSIEALDISCNMLVGEIPISFAVFKNLRLLHLFDNKLSGEIPGFMADLPKLEILQLWNNNFTGSIPRNLGKNGMLRTLDLAFNHLTGTIPPEVCHGNKLEVLIAMGNSLSGLIPESLGNCISLKRILLWGNALNGSIPKRLLGLPNITQIDLHDNFLSGELPITNSVSANLLQISLSNNMLSGSLPPTIGSLVAVQKLLLDRNKFSGQIPSSIGRLQQLSRINFSQNKFSGSIVAEISECKHLIFLDLSGNELSGEIPNHITNMKLLNYMNLSRNHLVGPIPASIVNMQSLTSVDFSYNNLSGLVLGTGQFGYFNYTSFLGNPYLCGPYLGPCKDGILASNHQEHMKGSLSTPLRLLLAFGFFFCLVAVTVGLIFKVGWFKRARESRGWRLTAFQRLGFSVDEILECLKKENLIAKGGYGTVYTGVMPSGDQITVKRLPKMSNGCTRDNKFDAEIQALGRIRHRHIVRLLGLCSNHETNLLVFEYMPNGSLYEVLHGKKGGHLLWETRYKIAIGTANGLCYLHHHCSPPIVHRNVNSNNIMLDTNFDAQIANSGLAKFLQDSGASDISATEPEHTYSQNVDEKWDVYSFGVVLLELVSGRNPDVELSNSVDLVQWVRNMTDTKKEEIHKIVDQRLSSVPLEEVIHVLNVAMLCTEEEAPKRPTMREVVRILTEHQQQ 973
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4552890 4556362 - MELO3C007675.2.1 Cme08g00688 334951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00688 973 ProSiteProfiles Protein kinase domain profile. 704 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00688 973 Gene3D Ribonuclease Inhibitor 343 633 IPR032675 -
Cme08g00688 973 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 15 971 - -
Cme08g00688 973 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 15 971 - -
Cme08g00688 973 SUPERFAMILY L domain-like 368 629 - -
Cme08g00688 973 Gene3D Phosphorylase Kinase; domain 1 676 781 - -
Cme08g00688 973 Pfam Leucine rich repeat 130 187 IPR001611 GO:0005515
Cme08g00688 973 Gene3D Ribonuclease Inhibitor 37 192 IPR032675 -
Cme08g00688 973 Gene3D Ribonuclease Inhibitor 193 291 IPR032675 -
Cme08g00688 973 Pfam Leucine Rich Repeat 539 559 IPR001611 GO:0005515
Cme08g00688 973 Gene3D Ribonuclease Inhibitor 292 342 IPR032675 -
Cme08g00688 973 SUPERFAMILY Protein kinase-like (PK-like) 699 967 IPR011009 -
Cme08g00688 973 Pfam Leucine rich repeat N-terminal domain 39 78 IPR013210 -
Cme08g00688 973 Pfam Protein tyrosine and serine/threonine kinase 705 967 IPR001245 GO:0004672|GO:0006468
Cme08g00688 973 Gene3D Transferase(Phosphotransferase) domain 1 782 973 - -
Cme08g00688 973 SUPERFAMILY RNI-like 86 406 - -
Cme08g00688 973 SMART LRR_typ_2 488 512 IPR003591 -
Cme08g00688 973 SMART LRR_typ_2 584 607 IPR003591 -
Cme08g00688 973 SMART LRR_typ_2 176 200 IPR003591 -
Cme08g00688 973 SMART LRR_typ_2 344 368 IPR003591 -
Cme08g00688 973 SMART LRR_typ_2 128 152 IPR003591 -
Cme08g00688 973 SMART LRR_typ_2 369 392 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00688 Cme-Chr8:4552890 Cme01g00482 Cme-Chr1:3476964 0 dispersed
Cme08g00688 Cme-Chr8:4552890 Cme08g00690 Cme-Chr8:4565155 1.39E-27 proximal
Cme03g00025 Cme-Chr3:524471 Cme08g00688 Cme-Chr8:4552890 2.60E-43 transposed
Cme04g00458 Cme-Chr4:3646988 Cme08g00688 Cme-Chr8:4552890 0 transposed
Cme05g01857 Cme-Chr5:27333782 Cme08g00688 Cme-Chr8:4552890 3.02E-152 transposed
Cme06g02141 Cme-Chr6:27146961 Cme08g00688 Cme-Chr8:4552890 0 transposed
Cme07g01827 Cme-Chr7:23749651 Cme08g00688 Cme-Chr8:4552890 0 transposed
Cme08g01559 Cme-Chr8:15539501 Cme08g00688 Cme-Chr8:4552890 4.23E-07 transposed
Cme04g00183 Cme-Chr4:1371811 Cme08g00688 Cme-Chr8:4552890 7.66E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65077 PF07714 PK_Tyr_Ser-Thr 3.50E-37 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00688 - - csv:101204543 1836.62