Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00690 ATGACTGGAGATTTCCCCATTGTAGTCACTGAAATGTCGAGCCTCCGTCATTTGCATTTGGGAGGAAATTTCTTTGCCGGACGGATCCCGCCGGAAGTGGGTCGGATGCAGTCTTTGGAGTACTTGGCGGTTTCTGGTAACGAACTTAGCGGTCCGATACCGCCGGAGCTTGGAAACCTTACCAACCTTCGTGAGCTTTACATTGGCTACTTCAACGCCTACGACGGCGGTCTTCCAGCTGAGATTGGGAATTTGTCACAGTTGGTACGGTTGGACGCTGCGAACTGTGGACTGTCTGGCCGGATTCCGCCGGAGCTTGGAAAGCTGCAGAATCTCGATACTTTGTTTCTACAAGTTAATGCTCTATCTGGGCCATTGACGCCGGAGATTGGACAGTTGAACAGTTTGAAATCGTTGGATTTGTCGAACAATATGCTTGTGGGTGAGATTCCCGTCTCCTTCGCCCAGTTGAAGAATTTGACGCTGTTGAATCTGTTTAGAAACAAGTTACATGGGGCGATTCCTTCCTTTATTGGCGACTTGCCGAAGCTGGAGGTCTTGCAGTTATGGGAGAATAATTTCACGGAAGCCATTCCACAGAACCTGGGGAAGAACGGAATGCTTCAGATATTGGACCTTTCTTCCAATAAACTGACTGGAACTCTTCCTCCCGACATGTGTTTCGGTAATCGGCTTCAAATTCTGATCGCATTGAGCAATTTCTTGTTTGGTCCAATCCCAGAGTCGTTAGGCAAATGCGCTTCCCTCAATCGTATTCGTATGGGGGAAAATTTTCTCAATGGATCCATTCCAAAGGGGCTTCTGAGTCTTCCCAAGCTCTCTCAGGTGGAGTTACAAGACAATTTTCTCTCCGGCGAGTTCCCAATAACCGATTCAATCTCATTGAATCTCGGCCAGATTAGTCTTTCCAACAACCGACTCACTGGGTCGATTCCGCCAACAATTGGCAACTTCTCCGGCGTCCAGAAACTACTCCTCGACGGAAACAAGTTTTCCGGTCAAATCCCACCTGAGATTGGGCGGTTACAGCAACTTTCGAAGATAGATTTCAGCAGCAATATGCTATCGGGTCCAATCGCGCCGGAGATTAGCCAATGCAAGCTTCTAACCTTCGTCGATCTCAGCCGAAACCAGCTCTCGGGAGAAATTCCAAACGAGATTACCAGTATGAGGATATTGAATTATCTGAATCTCTCAAAAAACCATTTAGTCGGTGGAATCCCTGCTACCATAGCCAGCATGCAGAGTTTAACCTCCGTGGATTTCTCATACAACAACCTCTCCGGTTTAGTTCCGGGAACTGGGCAATTCAGTTACTTCAATTACACATCGTTTCTTGGAAATCCTGATCTCTGCGGCCCATATTTGGGACCATGCAAAGATGGGGTTGCCAATAGTAATTACCAACAACATGTGAAAGGCCCTCTCTCTGCTTCCCTCAAGCTCCTCCTTGTAATTGGTCTGCTTCTTTGCTCCATTGCATTTGCAGTTGCTGCCATCATCAAAGCTAGATCATTGAAGAGAGCCAGTGAGTCTCGGGCTTGGAAATTAACATCCTTCCAACGTTTAGATTTCACAGTTGATGATGTTCTTGATTGCTTGAAAGAAGATAACATTATTGGAAAAGGAGGGGCTGGAATTGTCTATAAAGGGGCCATGCCAAGTGGTGACCAGGTCGCCGTCAAAAGGCTGCCGGCGATGAGCCGGGGATCGTCTCATGATCATGGATTCAATGCTGAGATACAAACTCTTGGGAGGATTCGACATCGACATATTGATTCCGGCACTTCTGAGTGCATGTCTGCCATTGCTGGTTCTTATGGATATATAGCCCCAGAATATGCCTACACACTAAAAGTTGATGAGAAGAGTGACGTATATAGCTTTGGAGTTGTCCTATTGGAACTTGTCAGTGGAAGAAAACCCGTCGGAGAATTTGGGGATGGTGTCGACATAGTTCAATGGGTTAGAAAAATGACAGACTCAAACAAGGAAGAGGTAGTGAAAATCCTTGATCCAAGGCTCTCCTCCGTGCCACTCCACGAAGTGATGCACGTCTTCTACGTCGCAATGCTATGTGTCGAGGAACAGGCAGTGGAGCGCCCAACAATGCGGGAAGTGATCCAAATCCTATCGGAGATTCCACAGCCACCAAGTTCCAAACAAGGAGGAGATTCAACACTCCCCAACTCGTCACCACCCCCACCACCAACAGCTGCAGATTTAGACCTTCCAACAACAGGAACCAAGAACAAAAAAGAGCATCAGCAACAGCAACCGCCACCAGATCTTCTTAGCATTTGA 2325 47.31 MTGDFPIVVTEMSSLRHLHLGGNFFAGRIPPEVGRMQSLEYLAVSGNELSGPIPPELGNLTNLRELYIGYFNAYDGGLPAEIGNLSQLVRLDAANCGLSGRIPPELGKLQNLDTLFLQVNALSGPLTPEIGQLNSLKSLDLSNNMLVGEIPVSFAQLKNLTLLNLFRNKLHGAIPSFIGDLPKLEVLQLWENNFTEAIPQNLGKNGMLQILDLSSNKLTGTLPPDMCFGNRLQILIALSNFLFGPIPESLGKCASLNRIRMGENFLNGSIPKGLLSLPKLSQVELQDNFLSGEFPITDSISLNLGQISLSNNRLTGSIPPTIGNFSGVQKLLLDGNKFSGQIPPEIGRLQQLSKIDFSSNMLSGPIAPEISQCKLLTFVDLSRNQLSGEIPNEITSMRILNYLNLSKNHLVGGIPATIASMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGPCKDGVANSNYQQHVKGPLSASLKLLLVIGLLLCSIAFAVAAIIKARSLKRASESRAWKLTSFQRLDFTVDDVLDCLKEDNIIGKGGAGIVYKGAMPSGDQVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVSGRKPVGEFGDGVDIVQWVRKMTDSNKEEVVKILDPRLSSVPLHEVMHVFYVAMLCVEEQAVERPTMREVIQILSEIPQPPSSKQGGDSTLPNSSPPPPPTAADLDLPTTGTKNKKEHQQQQPPPDLLSI 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4565155 4568446 - MELO3C032975.2.1 Cme08g00690 334953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00690 774 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 600 737 - -
Cme08g00690 774 Gene3D Transferase(Phosphotransferase) domain 1 604 733 - -
Cme08g00690 774 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 600 737 - -
Cme08g00690 774 SUPERFAMILY L domain-like 158 466 - -
Cme08g00690 774 SUPERFAMILY Protein kinase-like (PK-like) 536 727 IPR011009 -
Cme08g00690 774 Gene3D Ribonuclease Inhibitor 1 229 IPR032675 -
Cme08g00690 774 Gene3D Ribonuclease Inhibitor 230 353 IPR032675 -
Cme08g00690 774 MobiDBLite consensus disorder prediction 721 735 - -
Cme08g00690 774 Pfam Leucine Rich Repeat 135 155 IPR001611 GO:0005515
Cme08g00690 774 Gene3D Phosphorylase Kinase; domain 1 506 603 - -
Cme08g00690 774 Gene3D Ribonuclease Inhibitor 355 466 IPR032675 -
Cme08g00690 774 MobiDBLite consensus disorder prediction 758 774 - -
Cme08g00690 774 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 9 599 - -
Cme08g00690 774 MobiDBLite consensus disorder prediction 721 774 - -
Cme08g00690 774 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 9 599 - -
Cme08g00690 774 SUPERFAMILY L domain-like 6 235 - -
Cme08g00690 774 ProSiteProfiles Protein kinase domain profile. 346 721 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00690 774 Pfam Protein tyrosine and serine/threonine kinase 614 718 IPR001245 GO:0004672|GO:0006468
Cme08g00690 774 SMART LRR_typ_2 133 156 IPR003591 -
Cme08g00690 774 SMART LRR_typ_2 181 205 IPR003591 -
Cme08g00690 774 SMART LRR_typ_2 12 36 IPR003591 -
Cme08g00690 774 SMART LRR_typ_2 206 229 IPR003591 -
Cme08g00690 774 SMART LRR_typ_2 421 444 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00690 Cme-Chr8:4565155 Cme04g00945 Cme-Chr4:12717183 3.68E-30 dispersed
Cme08g00688 Cme-Chr8:4552890 Cme08g00690 Cme-Chr8:4565155 1.39E-27 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65078 PF07714 PK_Tyr_Ser-Thr 1.40E-09 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00690 - - csv:101219011 1153.27