Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00704 ATGGAGCTCAGTCAACATGGTTTCTTAGAGGAGTTATTAGCTTCAACACCTTGGACTTCTTCATACTCAAATGGGTTTAATGATTTTTTTCAAAATGGCTGGAATTTCAGTTCTTTTGATGAAAATCCCCAAATGGGTTCTTCCACTTTCCCCAATTTTCCCACTATCCAAACAGCTAATGATTTTTCTTTCGCCGATCAACAACTCTACAGCAATTTTCTCGAAGGGTTTGCAATGCCGGAGCTTGATTCCTCATCCTACACTAAGAACAACGAAACCCCACCGTTTGTTTCGCAAGAAGAAATGAGTAATAAGAATAATGGTTACCCTCCGGTGGCGATGGAGGAGGAAGAACTTGGTTTTATGGAGAGTGAAACAGCTCCAAGTGTTTGTAAAGTGGAAATGGAGCAAATGGGTGTTCGTGAAATTAATGGTTCTATAATGGGTATCGCAGAATTGGGAAAAAGAAGCAGCAACAAAGCTAAGAAGATTGAAGGACAGCCTTCAAAGAATTTAATGGCGGAAAGAAGAAGAAGGAAGCGGTTGAATGATCGGCTTTCAATGCTCAGAGCCATAGTCCCTAAAATAAGCAAGATGGATAGAACGTCTATACTTGGAGACACCATCGATTATGTGAAAGAGCTGCTAGAAAGAATCAATAACTTGAAAGAAGAGGAAACTGGTTTAGATTCAAATCACGTGGGGTTATTCAATGGGATCTCTAATGAAGGGAAGTCCAATGAAGTTCAAGTGAGAAATTCTCCAAAGTTCGATGTTGAAAGGAAGGAGAAGGAGACTCGAATCGACATTTGCTGTGCAACAAGGCCAGGATTATTGCTGTCTACAGTCAACACATTAGAAGCATTGGGTCTTGAGATTCAGCAGTGTGTTATTAGCTGCTTCAATGATTTTTCGATGCAAGCTTCTTGTGCAGAGGGAAGTGCTCAGAAAGCTGTGGCAAGTTCTGATGATATAAAGGATGCACTGTTCAGAAATGCAGGATATGGAGGAAAGTGCTTGTAG 1023 40.76 MELSQHGFLEELLASTPWTSSYSNGFNDFFQNGWNFSSFDENPQMGSSTFPNFPTIQTANDFSFADQQLYSNFLEGFAMPELDSSSYTKNNETPPFVSQEEMSNKNNGYPPVAMEEEELGFMESETAPSVCKVEMEQMGVREINGSIMGIAELGKRSSNKAKKIEGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYVKELLERINNLKEEETGLDSNHVGLFNGISNEGKSNEVQVRNSPKFDVERKEKETRIDICCATRPGLLLSTVNTLEALGLEIQQCVISCFNDFSMQASCAEGSAQKAVASSDDIKDALFRNAGYGGKCL 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4701993 4704121 - MELO3C007694.2.1 Cme08g00704 334967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00704 340 CDD ACT_UUR-ACR-like 266 307 - -
Cme08g00704 340 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 340 - -
Cme08g00704 340 Pfam Helix-loop-helix DNA-binding domain 172 215 IPR011598 GO:0046983
Cme08g00704 340 PANTHER HELIX-LOOP-HELIX, PUTATIVE, EXPRESSED-RELATED 3 340 - -
Cme08g00704 340 Coils Coil 205 232 - -
Cme08g00704 340 SMART finulus 172 221 IPR011598 GO:0046983
Cme08g00704 340 Gene3D - 167 234 IPR036638 GO:0046983
Cme08g00704 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 230 IPR036638 GO:0046983
Cme08g00704 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00704 Cme-Chr8:4701993 Cme12g01562 Cme-Chr12:23013361 3.25E-23 dispersed
Cme06g01892 Cme-Chr6:22430202 Cme08g00704 Cme-Chr8:4701993 2.45E-11 transposed
Cme09g00514 Cme-Chr9:4954618 Cme08g00704 Cme-Chr8:4701993 1.95E-18 transposed
Cme03g01779 Cme-Chr3:26288771 Cme08g00704 Cme-Chr8:4701993 1.26E-85 wgd
Cme04g00212 Cme-Chr4:1591415 Cme08g00704 Cme-Chr8:4701993 3.71E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41805 PF00010 HLH 1.90E-09 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00704 - - csv:101205974 647.891