Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00712 ATGGGTAGAGGGAAGATTGTTATAAGAAGGATTGATAATTCAGCAAGTAGACAAGTAACTTTCTCAAAGAGAAGAAAGGGACTTATTAAAAAGGCTAAAGAACTCTCTATTCTCTGTGATGCTGAAGTTGGTCTCATTATTTTTTCTAGTTCTGGCAAACACTACGAATTTGCAAGCTCTAGCATGCATTCAATAATTGAGAAATATAACAGAAGGAAGGAGGAAGATGAACTACTGTTGAATCCAATTTCAGATGTGAAGTTATGGCAGAAGGAGGTAACAACATTAAGGCAGCAACTACATAACTTGCAGGAGAACAATAGGAAGTTAATGGGGGAGCAACTGTATGGTTTATCAATCAAAGATCTAAATAATCTTGAGAATCAATTGGAGTTTAGCTTACAAAGCATTCGAATTAAAAAGGAACAAATATTAAACGAAGAAATAAAAGAATTGAACAGAAAGGGAATTCTGATGCACCAAGAAAATATAGAGTTGTGCAATAAAGTAAGCCTTTATTGTCAAGAAAACATGGAATTACACAGAAAGGTTTATGGGCATAATTATTCAAGATCAGAGATGAACTTGGCCAACACCGGAAATGCCTTAATTCCATATGGTATCATCACTGCCACCGCCGCTGCCGCCCCTATTGCCGGGAACGACCTGTGTGTGCCAATTCATCTTCAGCTCAGCCCGCCGGAGCAACAACCTTAA 717 37.94 MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVKLWQKEVTTLRQQLHNLQENNRKLMGEQLYGLSIKDLNNLENQLEFSLQSIRIKKEQILNEEIKELNRKGILMHQENIELCNKVSLYCQENMELHRKVYGHNYSRSEMNLANTGNALIPYGIITATAAAAPIAGNDLCVPIHLQLSPPEQQP 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4739672 4743870 - MELO3C007700.2.1 Cme08g00712 334975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00712 238 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cme08g00712 238 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cme08g00712 238 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cme08g00712 238 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme08g00712 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 237 - -
Cme08g00712 238 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme08g00712 238 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cme08g00712 238 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 237 - -
Cme08g00712 238 Coils Coil 123 143 - -
Cme08g00712 238 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cme08g00712 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cme08g00712 238 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Cme08g00712 238 Coils Coil 86 113 - -
Cme08g00712 238 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Cme08g00712 238 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00712 Cme-Chr8:4739672 Cme08g00190 Cme-Chr8:1304027 1.58E-44 dispersed
Cme03g01799 Cme-Chr3:26427551 Cme08g00712 Cme-Chr8:4739672 1.67E-35 wgd
Cme07g02236 Cme-Chr7:26497289 Cme08g00712 Cme-Chr8:4739672 1.76E-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41806 PF01486 K-box 2.50E-24 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00712 K09264 - csv:101206453 409.453