Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00713 ATGGAGATCAAGAATGCCAAAATAAGAACAACACAACACAAAAAGCTTCGTCGCTTCTCAACAATGGCTGCTCTCCTTTTCTTATTCTTCGGTTTAGCTCTTGCCATGGCCGTACCGGTAATAATTGACAATGGCATAGTTCGAGTCACTTTTTCTCGTCCTGATGGCAATGTTATTGCTTTAAAATACAAGGGTGTTGACAACCTCCTTGAAATTCACAACGTCCACTATAACAGAGGATATTGGGACGTGGTTTGGAACCGCCCTAATAAAGCTAGTGCCACTGACAGGGTAAGAGCGACGAATTTCAAAGTAATTACCGCCAACGATGACCAAGTAGAGCTTTCATTCACCAAAACATGGGACCCTTCCGACGCTTCTTCGCTCCCTTTGAACATAGACAAAAGGTATATTGTGCGACGTGGCGATTCTGGGTTCTATTCATATGGTATATTTGAACGCCTCAATGGATGGCCTCAAATTGACGTTGATCAAATTAGAATTGCCTACAAACTCCTAGGGGACAAATTTCATTACATGGCGGTATCGGACGATAGACAGAGGATGATGCCAACTGCAGAGGACCGTCTTGCTGGGAAGCCTTTGGATTATCCGGAGGCGGTTCTATTAACCCGACCCGCCGATCCCAGCTTTCAAGGAGAGGTGGACGATAAGTACCAATACTCATTAGAAAATATGGAGAACAGGGTTCATGGATGGGAGTCGAGTGACCCACACGTGGGATTCTGGATGATCACGCCCAGTGATGAGTTCCGTACGGCTGGCCCCGTCAAGCAAGATCTCACTTCCCACGTCGGCCCCATAACTCTTTCTATGTTTGTGAGTACGCATTATGCGGGTAAAGACGTTTCCATGAGATTTCGAGAGGGAGAAGCTTGGAAGAAGGTATTCGGACCGGTTTTTACTTATTTAAACTCGGACCCAACCGGAACTGATAATCCCGGTTCACTCTGGGAGGATGCTAAAAACCAGATGACGATTGAAACAAGTAGATGGCCATACAACTTCGTTGAATCCAGAGAATTTCCATCGTCAGACCAAAGAGGAAGCTTGAGAGGTCAATTATTAGTCCGAGATAGATACGCCAAGTACCCACAGATGTGGGCGGATTCCGCTTATGTGGGCCTTGCTGCTCCTGGGGAACTGGGGTCTTGGCAAAGAGAAAGCAAGGGATACCAATTTTGGACACGAGCGGATGAACATGGATACTTCTCTATTGATAACATAAGATCGGGAACTTACAATTTATATGCTTGGGTACCTGGTGTCCTTGGTGATTACAAGTATGACAAGGAAATCACCATCACACCAAGAAGTTCCACAAATCTAAATTTGTTGGTCTTTGACCCTCCAAGACAAGGCCCAACTTTGTGGGAGATCGGCATCCCAGATAGGAAGGCAGCTGAGTTCTATATACCAAGTCCTCGACCTACCCTCATGAATCGCTTTTACAATGATTCCAAGATCCACATCCATGACGATAATTTTCGACAATACGGTCTTTGGGAACGTTATGCCGAATTGTATCCACATCAAGATCTTGTGTACAATGTCGACACCGACGATTACCGTCGTAACTGGTTCTTCGCTCATGTCACTAGAGCTACGAATTCTGGCATCTATGAGGCAACAACGTGGCAAATTGTGTTTCGTCTTCAAAGGCCTAAAAAGATCGGTAACTATATGCTTCGATTAGCCTTGGCCTCCTCAACTGAGGCTGTGATCGATATCCGATTCAACAACCCGTCAACCAAACGAACTCATTTCACAACCGGGTATTGGTCATCAGGAAAAGATAACGCCATTGCCAGACATGGAATTCATGGGCTTTATTGGTTATTCAACTTCAAGGTTCCAAGCCAATATTTGGTAGAAGGTGAAAACGTAATCTATCTAACCCAAAGAAGACATACAGGAGCATTTCAAGGAGTAATGTACGACTATATACGATTCGAAGACGTAGAGTGA 1989 44.9 MEIKNAKIRTTQHKKLRRFSTMAALLFLFFGLALAMAVPVIIDNGIVRVTFSRPDGNVIALKYKGVDNLLEIHNVHYNRGYWDVVWNRPNKASATDRVRATNFKVITANDDQVELSFTKTWDPSDASSLPLNIDKRYIVRRGDSGFYSYGIFERLNGWPQIDVDQIRIAYKLLGDKFHYMAVSDDRQRMMPTAEDRLAGKPLDYPEAVLLTRPADPSFQGEVDDKYQYSLENMENRVHGWESSDPHVGFWMITPSDEFRTAGPVKQDLTSHVGPITLSMFVSTHYAGKDVSMRFREGEAWKKVFGPVFTYLNSDPTGTDNPGSLWEDAKNQMTIETSRWPYNFVESREFPSSDQRGSLRGQLLVRDRYAKYPQMWADSAYVGLAAPGELGSWQRESKGYQFWTRADEHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDKEITITPRSSTNLNLLVFDPPRQGPTLWEIGIPDRKAAEFYIPSPRPTLMNRFYNDSKIHIHDDNFRQYGLWERYAELYPHQDLVYNVDTDDYRRNWFFAHVTRATNSGIYEATTWQIVFRLQRPKKIGNYMLRLALASSTEAVIDIRFNNPSTKRTHFTTGYWSSGKDNAIARHGIHGLYWLFNFKVPSQYLVEGENVIYLTQRRHTGAFQGVMYDYIRFEDVE 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4750323 4754020 + MELO3C007701.2.1 Cme08g00713 334976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00713 662 Pfam Rhamnogalacturonate lyase family 40 222 IPR010325 -
Cme08g00713 662 Gene3D - 352 453 - -
Cme08g00713 662 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 28 660 - -
Cme08g00713 662 SUPERFAMILY Starch-binding domain-like 397 453 IPR013784 GO:0030246
Cme08g00713 662 Pfam Polysaccharide lyase family 4, domain II 377 450 IPR029413 -
Cme08g00713 662 CDD RGL4_C 465 659 - -
Cme08g00713 662 CDD RGL4_N 40 316 - -
Cme08g00713 662 Gene3D - 461 659 - -
Cme08g00713 662 SUPERFAMILY Galactose mutarotase-like 44 317 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cme08g00713 662 CDD RGL4_M 354 451 IPR029413 -
Cme08g00713 662 Gene3D - 35 315 IPR014718 GO:0030246
Cme08g00713 662 Pfam Polysaccharide lyase family 4, domain III 463 657 IPR029411 -
Cme08g00713 662 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 28 660 - -
Cme08g00713 662 SUPERFAMILY Galactose-binding domain-like 461 659 IPR008979 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00226 Cme-Chr4:1714504 Cme08g00713 Cme-Chr8:4750323 0 dispersed
Cme04g00227 Cme-Chr4:1722724 Cme08g00713 Cme-Chr8:4750323 0 dispersed
Cme08g00410 Cme-Chr8:2518594 Cme08g00713 Cme-Chr8:4750323 6.37E-149 dispersed
Cme04g00225 Cme-Chr4:1705493 Cme08g00713 Cme-Chr8:4750323 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00713 K18195 - csv:101206696 1202.19