Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00714 CCCACACCATTCACTGGCCTTCAAATCAGCAACTCCAACCAAAGGAAATTACTTCTTCTCCTTATCCTTCTTCGTTTCACATTTTCAAATCTTGTTACGATGGGGAAATCGCCGGCGGAACAGCACCCTAAGAAGGCTTTCGGATGGGCTGCATCCGATACCTCCGGCATTCTTTCTCCCTTTCATTTCTCCCGAAGAGAAACAGGGGAAAATGATGTAGCTTTTAAAGTTCTTTACTGTGGAATTTGTCATTCTGATCTTCACATGGTGAAGAATGAATGGGGCAATACTATTTACCCCATTGTTCCTGGTCATGAAATCGTGGGTGAGGTAACCGAGGTTGGAAGCAAAGTAAAGAATTTCAAGGTCGGAGACAAAGTTGGCGTAGGATGTATGGTTGGATCCTGCCGCTCCTGTGATAACTGTTCCAACGACCTTGAGAACTATTGCCCCAAAATGATCCTCACCTACTCCAGCAAGGACTCTGACGGCTCCATAACCTACGGAGGCTACTCCGACTGTATGGTTGCCAATGAGCATTTCATTGTTCGCATTCCCGACAGCATCCCTCTGCAAGCCGGGGCTCCCCTGCTTTGTGCTGGAATCACAGTTTACAGCCCTTTGAGATATTTTGGACTTGATAAGCCTGGAATGAAAATTGGTGTGGTTGGTCTTGGTGGGCTCGGCCATGTCGCCGTCAAATTTGCTAAGGCCTTCGGCGCTAAGGTTACTGTGATTAGTACCTCGCCTAACAAGAAGCAGGAGGCTACTGAACGTCTTGGGGCTGATTCATTCTTGGTCAGCCGTGATCAAGAGCAAATGCAGGCTGCTAGGGGGACTTTGGACGGTATCATAGATACAGTCTCTGCTACCCATCCCCTTCTTCCTCTGCTGTCGCTTGTTAAAACACATGGAAAATTGGTTTTGGTTGGTGCACCAGAGAAGCCACTGGAGATCCCTGCCTTTGCTCTTATTGGGGGTAGAAAAACAATGGCCGGTAGTTGCATTGGAGGGATGAAGGAAACACAAGAGATGATTGATTTTGCTGCCAAACACAACATTACTGCAGATATTGAGTTGATTCCGATGGACGACGTCAATAAGGCAATGGAACGGATGCTGAAACAGGATGTCAAGTATCGATTCGTCATCGACATTGCTAACTCATTGAAGTCTAGCAGTTAA 1185 46.92 PTPFTGLQISNSNQRKLLLLLILLRFTFSNLVTMGKSPAEQHPKKAFGWAASDTSGILSPFHFSRRETGENDVAFKVLYCGICHSDLHMVKNEWGNTIYPIVPGHEIVGEVTEVGSKVKNFKVGDKVGVGCMVGSCRSCDNCSNDLENYCPKMILTYSSKDSDGSITYGGYSDCMVANEHFIVRIPDSIPLQAGAPLLCAGITVYSPLRYFGLDKPGMKIGVVGLGGLGHVAVKFAKAFGAKVTVISTSPNKKQEATERLGADSFLVSRDQEQMQAARGTLDGIIDTVSATHPLLPLLSLVKTHGKLVLVGAPEKPLEIPAFALIGGRKTMAGSCIGGMKETQEMIDFAAKHNITADIELIPMDDVNKAMERMLKQDVKYRFVIDIANSLKSSS 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4754121 4756959 - MELO3C007702.2.1 Cme08g00714 334977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00714 394 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 190 354 IPR036291 -
Cme08g00714 394 SUPERFAMILY GroES-like 55 217 IPR011032 -
Cme08g00714 394 PANTHER 8-HYDROXYGERANIOL DEHYDROGENASE-RELATED 34 392 - -
Cme08g00714 394 Gene3D - 200 356 - -
Cme08g00714 394 Pfam Alcohol dehydrogenase GroES-like domain 71 184 IPR013154 -
Cme08g00714 394 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 104 118 IPR002328 GO:0008270|GO:0016491
Cme08g00714 394 CDD CAD1 47 385 - -
Cme08g00714 394 PANTHER ALDEHYDE REDUCTASE 34 392 - -
Cme08g00714 394 Pfam Zinc-binding dehydrogenase 227 350 IPR013149 -
Cme08g00714 394 SMART PKS_ER_names_mod 56 384 IPR020843 GO:0016491
Cme08g00714 394 Gene3D - 49 386 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00092 Cme-Chr1:632059 Cme08g00714 Cme-Chr8:4754121 7.36E-120 dispersed
Cme04g00447 Cme-Chr4:3546623 Cme08g00714 Cme-Chr8:4754121 3.19E-118 dispersed
Cme08g00714 Cme-Chr8:4754121 Cme11g00085 Cme-Chr11:721295 1.27E-164 dispersed
Cme08g00714 Cme-Chr8:4754121 Cme06g01378 Cme-Chr6:12016238 2.61E-126 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00714 - K23232 csv:101222715 702.975