Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00728 ATGGCGAAAGAGAAAATCCAGATCAGGAAGATCGATAACGCCACGGCGAGGCAGGTCACTTTCTCCAAGCGTCGGAGGGGACTATTCAAGAAAGCCAAAGAGCTTTCCGTTTTATGCGATGCCGATGTTGCCCTCATTATCTTCTCCGCCACCGGAAAGCTGTTTGAGTACTCCAGCTCAAGCATGAAGGGAATCATAGAAAGACATAATTTGCACTCTAAGAACCTTCAGAAATTGGAACAACCATCCCTTGAATTACAGCTGGTTGAAAACAGCAATTACACCCGATTAAACAAGGAAATTGCTGAAAAAACTCATCAGCTAAGGCAGATGAGGGGTGAGGAACTTCAAACATTGAATATAGAGGAATTGCAGCAGTTAGAGAAGTCACTGGAGTCTGGATTGAGCCGTGTGATGGAGAAAAAGGGTGAACGGATCATGAAAGAGATCACTGACCTTCAAAGAAAGTCGGCCGAGTTGATGGATGAGAATAAGCGATTGAAGCAACAAGCGGAGAAAATGAATGGCGTGAGGCACCTGGGCGTAGAGCCCGAGATTTTGGTCGTAGAAGATGGCCAGTCGTCGAACTCCGTCACTGAAGTTTGTGTCTCCAACTCCAATGGCCCGCCTCAAGATCTGGAAAGCTCAGACACATCTCTTAAATTAGGGCTGCCGTATACCGGATGA 687 46.58 MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSSSMKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLESSDTSLKLGLPYTG 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4841959 4847053 - MELO3C007716.2.1 Cme08g00728 334991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00728 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 225 - -
Cme08g00728 228 Pfam K-box region 92 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme08g00728 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cme08g00728 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cme08g00728 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cme08g00728 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cme08g00728 228 PANTHER MADS-BOX PROTEIN SVP ISOFORM X1 1 225 - -
Cme08g00728 228 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme08g00728 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cme08g00728 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cme08g00728 228 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Cme08g00728 228 MobiDBLite consensus disorder prediction 198 228 - -
Cme08g00728 228 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677|GO:0046983
Cme08g00728 228 Coils Coil 94 114 - -
Cme08g00728 228 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Cme08g00728 228 Coils Coil 143 177 - -
Cme08g00728 228 Coils Coil 121 141 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01799 Cme-Chr3:26427551 Cme08g00728 Cme-Chr8:4841959 5.17E-90 dispersed
Cme08g00728 Cme-Chr8:4841959 Cme11g02531 Cme-Chr11:31756996 5.85E-41 dispersed
Cme07g02243 Cme-Chr7:26544560 Cme08g00728 Cme-Chr8:4841959 3.67E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41808 PF01486 K-box 2.20E-16 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00728 - - csv:101203152 432.95