Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme08g00737 | ATGGCGGATAGTTTTTACTGTACAGAGAATGCCAATATTTGTTTTGATGAAAATAATGAATTTGATGAACGATGCTCAATTTCTCTGCCCCATCGAAGAACCCGTGAACCGAATGTTGAATTTTTCGGATCCGAAAATTTTCTGGGCTCTTCTGTACTAGAGAGTGAAGAGAGAGTTAAAAGAATGGTTGAGAAAGAGATTGAGCATTTACCAACTCATGATTATCTTAAGAGAATGCTCTCTGGGGATTTGGATTTGAAGTTTAGAAGAGAGGCTGTTGATTGGATTTGGAAGGCTCATGCCCATTACAGCTTTGGTCCTCTGAGTCTTTGTTTATCTATGAACTACTTGGACCGTTTCCTCTCAGTGTATCATTTGCCTATGGATAAAAGCTGGACTGTACAGCTGCTGTCAGTAGCTTGTATGTCTTTAGCAGCAAAAATGGAGGAGACAGAAGTTCCTCTTCCTATAGATTTACAGGTTGAGGAACCAAAGTTTGTGTTTGAAGCAAAAACCATACAAAGAATGGAACTTCTTGTTCTAAGTAGGTTGAAATGGAAGATGCAAGCCATAACTCCATTTTCTTTCATTGATTATTTCCTCAGTAAGATCAGTGTTGAGCAGCAGAACATACCAAGCTTTTACTTCTCAAAATCATCACAACTCATTCTGAGCACAATTAAAGGCATTGACTTCTTGGAATTCAAGCCTTCTGAAATTGCTTTGGCTGTGGCAATTTCCATTTCAAGAGAATTTCAAACACCAGATATGAATAAAGCAATCCTTTCTTTTCCATATATGGAGAAAGAAAGAGTGATGAAGTGCATTGAACTGATTAGAGATTTTTCATTGATTAGTAATGTATATGGAAATACATTGGGTGGTGGTAATGTTGGTTCAGTTCCTCAAAGCCCTGTTGGGGTTTTGGATGCAGCTTGTTTGAGTTACAAAACAGAGGAATTATTAACCGCAGGTTCATATGGTAATGGTAATTCTTCTTCTTCTTCTTCTTCTTCTTCTCATGACAGTCAAGACAGCAAGAGGAGGAGACAAGATAGACCATCATCAAATGATGATGATACAAGTCCATCCAGTCCTGTCAAATGA | 1107 | 38.03 | MADSFYCTENANICFDENNEFDERCSISLPHRRTREPNVEFFGSENFLGSSVLESEERVKRMVEKEIEHLPTHDYLKRMLSGDLDLKFRREAVDWIWKAHAHYSFGPLSLCLSMNYLDRFLSVYHLPMDKSWTVQLLSVACMSLAAKMEETEVPLPIDLQVEEPKFVFEAKTIQRMELLVLSRLKWKMQAITPFSFIDYFLSKISVEQQNIPSFYFSKSSQLILSTIKGIDFLEFKPSEIALAVAISISREFQTPDMNKAILSFPYMEKERVMKCIELIRDFSLISNVYGNTLGGGNVGSVPQSPVGVLDAACLSYKTEELLTAGSYGNGNSSSSSSSSSHDSQDSKRRRQDRPSSNDDDTSPSSPVK | 368 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 4915013 | 4917254 | + | MELO3C007725.2.1 | Cme08g00737 | 335000 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme08g00737 | 368 | ProSitePatterns | Cyclins signature. | 89 | 120 | IPR006671 | - | |
| Cme08g00737 | 368 | MobiDBLite | consensus disorder prediction | 325 | 368 | - | - | |
| Cme08g00737 | 368 | SUPERFAMILY | Cyclin-like | 54 | 188 | IPR036915 | - | |
| Cme08g00737 | 368 | MobiDBLite | consensus disorder prediction | 325 | 341 | - | - | |
| Cme08g00737 | 368 | Gene3D | - | 60 | 278 | - | - | |
| Cme08g00737 | 368 | SUPERFAMILY | Cyclin-like | 173 | 290 | IPR036915 | - | |
| Cme08g00737 | 368 | CDD | CYCLIN | 89 | 181 | IPR013763 | - | |
| Cme08g00737 | 368 | PANTHER | CYCLINS | 46 | 339 | IPR039361 | - | |
| Cme08g00737 | 368 | Pfam | Cyclin, N-terminal domain | 60 | 188 | IPR006671 | - | |
| Cme08g00737 | 368 | Gene3D | - | 72 | 189 | - | - | |
| Cme08g00737 | 368 | PANTHER | CYCLIN-D4-1-LIKE | 46 | 339 | - | - | |
| Cme08g00737 | 368 | SMART | cyclin_7 | 94 | 182 | IPR013763 | - | |
| Cme08g00737 | 368 | Pfam | Cyclin, C-terminal domain | 191 | 283 | IPR004367 | - | |
| Cme08g00737 | 368 | SMART | Cyclin_C_2 | 191 | 304 | IPR004367 | - | |
| Cme08g00737 | 368 | MobiDBLite | consensus disorder prediction | 342 | 357 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme01g00076 | Cme-Chr1:541452 | Cme08g00737 | Cme-Chr8:4915013 | 8.55E-47 | dispersed | |
| Cme07g00288 | Cme-Chr7:1864543 | Cme08g00737 | Cme-Chr8:4915013 | 8.42E-34 | dispersed | |
| Cme07g00321 | Cme-Chr7:2043673 | Cme08g00737 | Cme-Chr8:4915013 | 3.23E-44 | dispersed | |
| Cme08g00596 | Cme-Chr8:3802829 | Cme08g00737 | Cme-Chr8:4915013 | 5.33E-44 | dispersed | |
| Cme08g00737 | Cme-Chr8:4915013 | Cme10g00495 | Cme-Chr10:3184437 | 1.59E-40 | dispersed | |
| Cme07g02202 | Cme-Chr7:26268922 | Cme08g00737 | Cme-Chr8:4915013 | 6.94E-66 | transposed | |
| Cme09g00668 | Cme-Chr9:7328331 | Cme08g00737 | Cme-Chr8:4915013 | 1.20E-54 | transposed | |
| Cme11g01106 | Cme-Chr11:16360182 | Cme08g00737 | Cme-Chr8:4915013 | 1.49E-39 | transposed | |
| Cme03g01823 | Cme-Chr3:26613276 | Cme08g00737 | Cme-Chr8:4915013 | 3.01E-99 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme08g00737 | K18810 | - | csv:101209378 | 688.337 |