Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00763 TTTCCTCTTCCTTTTATCAAGTCCAGTGTGTCCCCAACTCCAACATTCAAGTCAAATCCTCCTCCCATCCAATTCAATCCATCTCCTTCTTCACTTCTCTTCTCACAACTCCCTGCCCCTCTTTTTGCTCTAACACGGCTCTCAATCCCCATGAATCCTCCCACTTTTCCAATCCAATTTTCCGGCGATCCACTTCCGGCCTCCACTATCATCGGAAGCGGGGACCCCAGGATTCCCTTACAAAACCTCTCAACCATCCGTTCCAGCATGGATGCCCTCCAAAGCTTCCTCTCCCATAACATCCACAGAGAAGTTCGTATCAGCAATCAACAGATGGATGCCGTTTCATCTGAAATCTTCACCGCAATCCAACAGATCATCGTCAACGGCGCCGCTCTTTTAACCTGTGCCCAATCGAAAACCCCAACTCCCCCGGATTTGACGGCTTCGACAACTCGAACTCAGCCGAATTCTGTAACAGAGAAATCAATGGCGGAGCTGAAGGTGGAGGGTGTAGATGAGATTACGATAACCGAATCTGAAGAATCTGACCCAGATTGGGAAGTAGTGGAGCTGGATGCGATGGAATTGCTAGCGGAACACATCCATTTCTGTGAAATCTGCGGGAAAGGGTTCAAGCGAGACGCGAATTTACGGATGCATATGCGGGCCCATGGGAATCAATTCAAGACCCCAGAGGCTTTGGCTAAGCCGTTGGATGATGTTGGTGCGGACCACAGAGCGAAACGCACGCGATTCTCGTGCCCTTACGATGGTTGTGTAAGGAACAAAATGCACAAGAAATTTAGGGCACTGAAATCCTTGATTTGCGTCAAGAATCACTTCAAGCGCAGCCACTGCCCTAAGATGTTCTCTTGTAATCGTTGCAACAAAAAGAGTTTCTCTGTAATGGCGGACTTGAAAAGCCATTTGAAGCACTGCGGTGAGTCCAAGTGGCGGTGTTCTTGTGGAACCACCTTCTCCCGTAAGGATAAGTTGTTTGGTCATATGGCGTTGTTCGAAGGCCACATGCCGGCAGTTCCGGATGACGCTTGTGCCACGGTGGCGACGACGACGTCGGAAATGGATGAAGATGGAGACAGTAATCAGATCTCGAAGGATGTTAATCTCCAAAACGGGTCCAATGTTTCGTCGGATGATGGATCTTTTGAGTCGTTTCTTGATGGGTTTGGTTTGATTGAGAATCAAAGTTTACAAGAGGTGCTGGGATTCCCTTATGATTTCGATTCGGAATCAGAATGGAAATTTCGTGGTTTCTGA 1281 48.24 FPLPFIKSSVSPTPTFKSNPPPIQFNPSPSSLLFSQLPAPLFALTRLSIPMNPPTFPIQFSGDPLPASTIIGSGDPRIPLQNLSTIRSSMDALQSFLSHNIHREVRISNQQMDAVSSEIFTAIQQIIVNGAALLTCAQSKTPTPPDLTASTTRTQPNSVTEKSMAELKVEGVDEITITESEESDPDWEVVELDAMELLAEHIHFCEICGKGFKRDANLRMHMRAHGNQFKTPEALAKPLDDVGADHRAKRTRFSCPYDGCVRNKMHKKFRALKSLICVKNHFKRSHCPKMFSCNRCNKKSFSVMADLKSHLKHCGESKWRCSCGTTFSRKDKLFGHMALFEGHMPAVPDDACATVATTTSEMDEDGDSNQISKDVNLQNGSNVSSDDGSFESFLDGFGLIENQSLQEVLGFPYDFDSESEWKFRGF 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5101980 5103411 - MELO3C007752.2.1 Cme08g00763 335026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00763 426 MobiDBLite consensus disorder prediction 141 160 - -
Cme08g00763 426 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 71 416 - -
Cme08g00763 426 Gene3D Classic Zinc Finger 278 348 - -
Cme08g00763 426 MobiDBLite consensus disorder prediction 1 21 - -
Cme08g00763 426 Pfam Zinc finger, C2H2 type 204 225 IPR013087 -
Cme08g00763 426 ProSiteProfiles Zinc finger C2H2 type domain profile. 203 230 IPR013087 -
Cme08g00763 426 ProSitePatterns Zinc finger C2H2 type domain signature. 205 225 IPR013087 -
Cme08g00763 426 SUPERFAMILY beta-beta-alpha zinc fingers 200 226 IPR036236 -
Cme08g00763 426 SMART c2h2final6 203 225 IPR013087 -
Cme08g00763 426 SMART c2h2final6 319 343 IPR013087 -
Cme08g00763 426 SMART c2h2final6 253 286 IPR013087 -
Cme08g00763 426 SMART c2h2final6 291 313 IPR013087 -
Cme08g00763 426 Gene3D Classic Zinc Finger 203 226 - -
Cme08g00763 426 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 71 416 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00730 Cme-Chr1:7159658 Cme08g00763 Cme-Chr8:5101980 5.45E-82 dispersed
Cme08g00763 Cme-Chr8:5101980 Cme12g00482 Cme-Chr12:8275347 2.62E-70 dispersed
Cme08g00763 Cme-Chr8:5101980 Cme03g01971 Cme-Chr3:27590275 3.65E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41812 PF00096 zf-C2H2 0.00018 CL0361 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00763 - - cmo:103484966 858.981