Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00802 ATGGCGGGTCAACCGTCAGATTCTTCCCCCCTTATTCCTCCGGCGCCGATCAGCGACCCTAGTGAGATCGACCTTGAAGCTGGTCAAGGGGAACAAATTCAGTGTAGAATTTGCCTTGAGACCGATGGTAGGGATTTTATTGCTCCTTGCAAATGCAAAGGGACATCCAAATATGTTCATCGAGAATGTCTGGATCATTGGCGAGCCGTGAAGGAAGGGTTTGCTTTTGCTCACTGTACCACATGCAAGGCCCCTTACCATTTGAGAGTACATGCTGTTGCTGACAGAAAATGGCGAACCCTGAAATTTCGATTTTTTGTGACTAGAGACATTATATTTATATTTTTGGCGGTTCAGCTTGTAATTGCTTCTCTGGGATACTTGACATACTTTATAGATGGTTGTCAACATTATTGGCTTCGTCTTACTTGGGGTTTTGATAGCAGAATTAGTTTTTATTACATCTGCGGAGCTTTATTATTTTTTGCATTGCTCGGCGTATCTGGCTGCTTCATCACTTGTTATGATCGGAGAGTGAGGAGTGATTTGGCTCAACCATGTAGAGAATTGTGTCTATGTTGTTGCCACCCTGGACTATGTGCAGACTGTCATTTACCTGGTACTCTTTGTATGTGGACCGATTGTACCACTTGCTTCGAAAGTTGTGGAAGCATAGCAACTGAATGTGGATGCCTAGGAGGTGCTGGTGAAGCAGGACTGCCATTATTACTTATAATGGCCTTAATTGTTCTTGGTTTGTTCACGGTGATTGGTATATTTTATAGTGTCTTGGTGGCTACCATGGTTGGCCAACGAATATGGCAACGACACTATCACATACTTGCGAAAAGAATGCTAACAAAGGAATATGTTGTGGAAGATGTAGATGGGGAGATGACAGGATCTGAGTGGTTGCCTCCACCACTTCCTGCAGAGCACGTTCAACAGCTGAAAACTCTTGGCCTTTTATGA 972 43.83 MAGQPSDSSPLIPPAPISDPSEIDLEAGQGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHAVADRKWRTLKFRFFVTRDIIFIFLAVQLVIASLGYLTYFIDGCQHYWLRLTWGFDSRISFYYICGALLFFALLGVSGCFITCYDRRVRSDLAQPCRELCLCCCHPGLCADCHLPGTLCMWTDCTTCFESCGSIATECGCLGGAGEAGLPLLLIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSEWLPPPLPAEHVQQLKTLGLL 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5333640 5338569 - MELO3C007787.2.1 Cme08g00802 335065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00802 323 CDD RING_CH-C4HC3_MARCH 35 83 - -
Cme08g00802 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 95 IPR013083 -
Cme08g00802 323 SMART ringv_2 34 83 IPR011016 GO:0008270
Cme08g00802 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 6 323 - -
Cme08g00802 323 ProSiteProfiles Zinc finger RING-CH-type profile. 27 89 IPR011016 GO:0008270
Cme08g00802 323 PANTHER BNAA04G12620D PROTEIN 6 323 - -
Cme08g00802 323 Pfam RING-variant domain 35 82 IPR011016 GO:0008270
Cme08g00802 323 SUPERFAMILY RING/U-box 31 87 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01259 Cme-Chr2:18183180 Cme08g00802 Cme-Chr8:5333640 4.92E-62 dispersed
Cme04g01487 Cme-Chr4:21326709 Cme08g00802 Cme-Chr8:5333640 4.02E-09 dispersed
Cme08g00802 Cme-Chr8:5333640 Cme05g00933 Cme-Chr5:12774493 6.03E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00802 - - csv:101214008 657.907