Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00821 ATGACGGGCCGAGGATCATCGGGAAGGACGCCGACATGGAAAGAAAGGGAGAACAATAAGAGGAGAGAGAGGCGACGGAGGGCCATTGCTGCTAAGATCTACACTGGCCTTAGAGCTCAAGGGAACTATAAGCTTCCTAAGCACTGTGACAACAACGAAGTCTTAAAGGCACTCTGTAATGAAGCTGGTTGGGTGGTTGAGGAAGATGGCACAACCTATCGCAAGGGATGCAAGCCACCTCCGATTGATATTGGCACTTCTGCTAATATGAGCGCCTGTTCTTCGCTTCAACCGAGCCCGCAGTCTTCATGCTTCCCAAGTCCTGTACCATCGTACCACGCCAGTCCTTCTTCATCCTCTTTTCCAAGCCCGACTCGATTTGATGGGAATCCATCTTCTTATCTTCTGCCATTTCTTCAAAATATATCCTCTATTCCTGCTAATCTACCTCCTCTTAGGATATCCAACAGTGCACCTGTCACGCCACCTCTTTCTTCCCCAACTTCAAGGGGTTCGAAGCGAAAGCCAGATTGGGAGTCCATTCCAAATAGCTATGTGACCTCTTTCCGTCATCCACTTTTTGCTGTCTCTGCTCCTTCAAGTCCTACAAGATGCCACCATCTTACACCGGCAACAATTCCAGAATGTGATGAATCTGATGCTTCAACTGTAGATTCTGGCCGCTGGGTCAGTTTCCAGACTGTGGCACCTTCTGTGGCTCCTCCTTCGCCTACATTTAATCTGATGAAACCGGTTAGCCAGCAAAACTCTCTCCAAGATGCAGTTGACAGACATGGAACGATGGGCTGGGGTGCTACATCTGATAGGACACGTGGCTCTGAGTTTGAATTTGAGAAATTTGAGAGTGGCACAGTGAAGCCATGGGAGGGTGAGAGAATTCATGAAGTTGGGGTTGATGATCTTGAGCTTACTCTTGGAGGTGGGAAGGCCCGTGGTTAA 960 48.85 MTGRGSSGRTPTWKERENNKRRERRRRAIAAKIYTGLRAQGNYKLPKHCDNNEVLKALCNEAGWVVEEDGTTYRKGCKPPPIDIGTSANMSACSSLQPSPQSSCFPSPVPSYHASPSSSSFPSPTRFDGNPSSYLLPFLQNISSIPANLPPLRISNSAPVTPPLSSPTSRGSKRKPDWESIPNSYVTSFRHPLFAVSAPSSPTRCHHLTPATIPECDESDASTVDSGRWVSFQTVAPSVAPPSPTFNLMKPVSQQNSLQDAVDRHGTMGWGATSDRTRGSEFEFEKFESGTVKPWEGERIHEVGVDDLELTLGGGKARG 319
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 5434941 5437903 + MELO3C007804.2.1 Cme08g00821 335084
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00821 319 Pfam BES1/BZR1 plant transcription factor, N-terminal 6 129 IPR008540 -
Cme08g00821 319 MobiDBLite consensus disorder prediction 1 25 - -
Cme08g00821 319 PANTHER BES1/BZR1 HOMOLOG PROTEIN 1 1 318 - -
Cme08g00821 319 MobiDBLite consensus disorder prediction 155 179 - -
Cme08g00821 319 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 318 IPR033264 GO:0003700|GO:0006351|GO:0009742
Cme08g00821 319 MobiDBLite consensus disorder prediction 155 171 - -
Cme08g00821 319 MobiDBLite consensus disorder prediction 10 24 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00821 Cme-Chr8:5434941 Cme11g02155 Cme-Chr11:28978200 2.36E-16 dispersed
Cme12g01261 Cme-Chr12:20706393 Cme08g00821 Cme-Chr8:5434941 5.65E-48 transposed
Cme03g01975 Cme-Chr3:27612904 Cme08g00821 Cme-Chr8:5434941 3.93E-95 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41815 PF05687 BES1_N 1.70E-64 No_clan Cme TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00821 K14503 - csv:101216171 578.17