Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00821 ATGACGGGCCGAGGATCATCGGGAAGGACGCCGACATGGAAAGAAAGGGAGAACAATAAGAGGAGAGAGAGGCGACGGAGGGCCATTGCTGCTAAGATCTACACTGGCCTTAGAGCTCAAGGGAACTATAAGCTTCCTAAGCACTGTGACAACAACGAAGTCTTAAAGGCACTCTGTAATGAAGCTGGTTGGGTGGTTGAGGAAGATGGCACAACCTATCGCAAGGGATGCAAGCCACCTCCGATTGATATTGGCACTTCTGCTAATATGAGCGCCTGTTCTTCGCTTCAACCGAGCCCGCAGTCTTCATGCTTCCCAAGTCCTGTACCATCGTACCACGCCAGTCCTTCTTCATCCTCTTTTCCAAGCCCGACTCGATTTGATGGGAATCCATCTTCTTATCTTCTGCCATTTCTTCAAAATATATCCTCTATTCCTGCTAATCTACCTCCTCTTAGGATATCCAACAGTGCACCTGTCACGCCACCTCTTTCTTCCCCAACTTCAAGGGGTTCGAAGCGAAAGCCAGATTGGGAGTCCATTCCAAATAGCTATGTGACCTCTTTCCGTCATCCACTTTTTGCTGTCTCTGCTCCTTCAAGTCCTACAAGATGCCACCATCTTACACCGGCAACAATTCCAGAATGTGATGAATCTGATGCTTCAACTGTAGATTCTGGCCGCTGGGTCAGTTTCCAGACTGTGGCACCTTCTGTGGCTCCTCCTTCGCCTACATTTAATCTGATGAAACCGGTTAGCCAGCAAAACTCTCTCCAAGATGCAGTTGACAGACATGGAACGATGGGCTGGGGTGCTACATCTGATAGGACACGTGGCTCTGAGTTTGAATTTGAGAAATTTGAGAGTGGCACAGTGAAGCCATGGGAGGGTGAGAGAATTCATGAAGTTGGGGTTGATGATCTTGAGCTTACTCTTGGAGGTGGGAAGGCCCGTGGTTAA 960 48.85 MTGRGSSGRTPTWKERENNKRRERRRRAIAAKIYTGLRAQGNYKLPKHCDNNEVLKALCNEAGWVVEEDGTTYRKGCKPPPIDIGTSANMSACSSLQPSPQSSCFPSPVPSYHASPSSSSFPSPTRFDGNPSSYLLPFLQNISSIPANLPPLRISNSAPVTPPLSSPTSRGSKRKPDWESIPNSYVTSFRHPLFAVSAPSSPTRCHHLTPATIPECDESDASTVDSGRWVSFQTVAPSVAPPSPTFNLMKPVSQQNSLQDAVDRHGTMGWGATSDRTRGSEFEFEKFESGTVKPWEGERIHEVGVDDLELTLGGGKARG 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5434941 5437903 + MELO3C007804.2.1 Cme08g00821 335084

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00821 319 Pfam BES1/BZR1 plant transcription factor, N-terminal 6 129 IPR008540 -
Cme08g00821 319 MobiDBLite consensus disorder prediction 1 25 - -
Cme08g00821 319 PANTHER BES1/BZR1 HOMOLOG PROTEIN 1 1 318 - -
Cme08g00821 319 MobiDBLite consensus disorder prediction 155 179 - -
Cme08g00821 319 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 318 IPR033264 GO:0003700|GO:0006351|GO:0009742
Cme08g00821 319 MobiDBLite consensus disorder prediction 155 171 - -
Cme08g00821 319 MobiDBLite consensus disorder prediction 10 24 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00821 K14503 BZR1_2; brassinosteroid resistant 1/2 - csv:101216171 578.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00821 Cme-Chr8:5434941 Cme11g02155 Cme-Chr11:28978200 2.36E-16 dispersed
Cme12g01261 Cme-Chr12:20706393 Cme08g00821 Cme-Chr8:5434941 5.65E-48 transposed
Cme03g01975 Cme-Chr3:27612904 Cme08g00821 Cme-Chr8:5434941 3.93E-95 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g01975 . 35 344 BZR Transcription Factor Family AT1G75080 60.0 3.6e-88 322.0
Cme08g00821 . 28 319 BZR Transcription Factor Family AT1G75080 58.9 1.1e-79 293.9
Cme03g01975 . 35 345 BZR Transcription Factor Family AT1G19350 60.0 1.0e-87 320.5
Cme08g00821 . 28 317 BZR Transcription Factor Family AT1G19350 59.2 3.7e-77 285.4
Cme08g00821 . 6 319 BZR Transcription Factor Family AT3G50750 57.7 2.4e-77 285.8
Cme03g01975 . 35 344 BZR Transcription Factor Family AT3G50750 52.1 2.8e-62 235.7
Cme07g01358 . 77 325 BZR Transcription Factor Family AT4G18890 54.9 6.0e-49 191.0
Cme12g01261 . 118 365 BZR Transcription Factor Family AT4G18890 51.0 2.1e-46 182.6
Cme07g01358 . 1 325 BZR Transcription Factor Family AT1G78700 72.8 3.0e-116 415.2
Cme12g01261 . 39 365 BZR Transcription Factor Family AT1G78700 67.8 2.5e-102 369.0
Cme08g00821 . 28 200 BZR Transcription Factor Family AT4G36780 79.1 3.8e-64 241.9
Cme03g01975 . 67 238 BZR Transcription Factor Family AT4G36780 62.1 7.4e-44 174.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009316 0 1 1 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41815 PF05687 BES1_N 1.70E-64 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g00821 Cme_Chr08 FPKM 11.068289 12.001602 10.616922 11.495784 19.368736 17.563978 19.915598 22.605757 22.938995 22.05941