Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00823 ATGCTAAAGTGTTTTTTGGTCATAGCTTCGTTGATCTTCATCTCCTCCACATTTGCACAACACAATCTCCCTCCTAAAGAAAAATGGCTCACTTTGAAAGGGGATCATCCACTAGTAATAGCAAGAGGAGGATTATCTGGAGTGTTTCCAGAAGCAAGCCCTTTTGCAAATCAAATGGCTGTGATTACAGGTTTACAAAACACAGCATTGTATTGTAATCTTCAACTCACCAAAGATGGGATTGGCTTTTGCTTAACTGATCTTAGGCTTCAAAATTCAACCAATATTGAAGATACCTTCCCTCACGGTCGCAAGTCTTATAATGTCAATGGAAAGATTCTCAAAGGATGGTTCTCTGTTGATATCACGTCTATGATTCAAAGTGTCCTCTCTCGACCTAGTCTCTACGACGGTACTTTGCCAATCGCGGCTGTTGAAGATGTCCTTGGAATTAAACCGAATCAATTCTGGTTGAATGCCGAGTATGAAGCGTTCTATGCAGAACATGATCTGAGTGTAATATCGTACCTTCAAAAGGCATTGAGATTGATGCGAATAAACTTTGTATCATCTTCGGAGATTGGTATATTGAAAGGGATAAGTGGGAGTGTGAATAAAGCTAGAACAAAGCTGATATTCAGATTCTTAGAAGCTAATGAAATAGAGCCAACAACAAAGAAAACTTATGGTGCCTTGGCTCATGAACTTCCTATGATTAAGACATTTGCCTCAGGAATTCTGATCAGAAAAGAATATATTTGGCCAATTGGTCAAGACAAGTATGTGCAGCCTGCAACAAACATTGTCATTGATGCTCATAAGCTTGGCTTGGAAGTTTATGCTTCTGGCTTTGCAAATGATGCCATTGTTGGTTACAATTATAGTTATGATCCAATCCGTGAGTACCTTCAGTTTTTTGATAATGGCCATTTTGCTGTTGATGGAGTCCTTTCTGATTTCCCTCCCGCTGCTTCTCAAGCCATTGGATTAGAGCAAGCATTGGTGATAAGCAGCAATGGAGCAAGTGGGGATTTCCCAGGCTCAACTGACCTTGCTTACCAAAAAGCAATTGAGGAAGGAGCTGATGTCATTGATTGTTCAGTTCAATTATCAAAAGATGGAGTTCCTTTCTGTATGGAAATGGCAGATCTTTTGACAGGTACTACTGTTATCACTGCCTTCTCAGGAAAAACTACAAGTATCCCTGAAATTCAAGCTGAACCTGGAATCTTCTCTTTTGATCTTACTTGGGCTGAGATTCTTACTCTCAAACCTCAAATTTCAAACCCTTTCATGGCCTCTTCTGGTCTTGCTCGTAATCCAGCCTTTAAGAACAAGGGCAAGTTCATGACACTGCCTGAGTTTCTTGAGTTTTCTAAAGCCAAAGCTGTTTCTGGGATTATGATCAACATCCAAAACGCGGCGTATTTGGCTTCAAAGAAAGGTCTGGACATGGTGGGAACTGTAGCAACAGCCTTAGTCAATGCCACTTTTGACAAACAATCAACACAACAAGTTTTCATTAGATCAGATGATACTTCTGTGCTGTCCATTTTTATGAATAAGTTCCCAAATTTCATTAGAGTTTTAACTGTTGATTCAAAGATTGGAGATGCCCCAAAAGAAGCCCTTGAAGAAATCAAACACCATGCTCAAGTTGTGGCCATTCCTCGTGGCTCTATCATTGAAATAACAAACTATTTCACTACTGGCCTCACTAAAGTTGTTGCTGAAATGAAGGCTTCCAATCTCTCTGTCTTTGTTTATGTCATGAGAAATGAATATGTTTCCTTGCCCTTTGATTACTACTCTGAGGCCTCCGTGGAGGTTTCTACTTTTGTTGACTACTTCCACGTCGATGGCATCATTACTGAATTCCCCAATACTGCAAAACGATATATGACATGTCCATGCCGACCGACTCAGCAGAACCCAGAAAAAGCTCCTTATATAATAGTACCACCTGAAATTGGTATGATGATGAATATGGTGGAGCCAGAGGCTAAACCACCTACTGATCCTCCAATGCCGCCGTTGGATGCCAAAGACATTGTCGATCCACCGCTCCCGGGGGTGAACAAAATGCAAACGTCGACTCCTGCAGATGCTGCAGACACGCCTGCGGCAGCCGCCCCATCAGGCAGTGTATCAAATGTTGCTAACTTGTTTGTTTCTCTACTCTCAGTTGTTGCGCTTACCTTCTTCATATCACTGTAA 2217 41.32 MLKCFLVIASLIFISSTFAQHNLPPKEKWLTLKGDHPLVIARGGLSGVFPEASPFANQMAVITGLQNTALYCNLQLTKDGIGFCLTDLRLQNSTNIEDTFPHGRKSYNVNGKILKGWFSVDITSMIQSVLSRPSLYDGTLPIAAVEDVLGIKPNQFWLNAEYEAFYAEHDLSVISYLQKALRLMRINFVSSSEIGILKGISGSVNKARTKLIFRFLEANEIEPTTKKTYGALAHELPMIKTFASGILIRKEYIWPIGQDKYVQPATNIVIDAHKLGLEVYASGFANDAIVGYNYSYDPIREYLQFFDNGHFAVDGVLSDFPPAASQAIGLEQALVISSNGASGDFPGSTDLAYQKAIEEGADVIDCSVQLSKDGVPFCMEMADLLTGTTVITAFSGKTTSIPEIQAEPGIFSFDLTWAEILTLKPQISNPFMASSGLARNPAFKNKGKFMTLPEFLEFSKAKAVSGIMINIQNAAYLASKKGLDMVGTVATALVNATFDKQSTQQVFIRSDDTSVLSIFMNKFPNFIRVLTVDSKIGDAPKEALEEIKHHAQVVAIPRGSIIEITNYFTTGLTKVVAEMKASNLSVFVYVMRNEYVSLPFDYYSEASVEVSTFVDYFHVDGIITEFPNTAKRYMTCPCRPTQQNPEKAPYIIVPPEIGMMMNMVEPEAKPPTDPPMPPLDAKDIVDPPLPGVNKMQTSTPADAADTPAAAAPSGSVSNVANLFVSLLSVVALTFFISL 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5450488 5454340 - MELO3C007806.2.1 Cme08g00823 335086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00823 738 MobiDBLite consensus disorder prediction 686 711 - -
Cme08g00823 738 SUPERFAMILY PLC-like phosphodiesterases 334 634 IPR017946 GO:0006629|GO:0008081
Cme08g00823 738 CDD GDPD_SHV3_repeat_2 333 633 - -
Cme08g00823 738 ProSiteProfiles GP-PDE domain profile. 37 328 IPR030395 GO:0006629|GO:0008081
Cme08g00823 738 Gene3D Phosphatidylinositol (PI) phosphodiesterase 332 635 IPR017946 GO:0006629|GO:0008081
Cme08g00823 738 Gene3D Phosphatidylinositol (PI) phosphodiesterase 35 328 IPR017946 GO:0006629|GO:0008081
Cme08g00823 738 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPDL6-RELATED 3 735 - -
Cme08g00823 738 ProSiteProfiles GP-PDE domain profile. 333 634 IPR030395 GO:0006629|GO:0008081
Cme08g00823 738 SUPERFAMILY PLC-like phosphodiesterases 35 327 IPR017946 GO:0006629|GO:0008081
Cme08g00823 738 Pfam Glycerophosphoryl diester phosphodiesterase family 339 629 IPR030395 GO:0006629|GO:0008081
Cme08g00823 738 CDD GDPD_SHV3_repeat_1 37 327 - -
Cme08g00823 738 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 3 735 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00976 Cme-Chr1:11457959 Cme08g00823 Cme-Chr8:5450488 8.36E-13 dispersed
Cme08g00823 Cme-Chr8:5450488 Cme12g01940 Cme-Chr12:25353516 3.59E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00823 - - csv:101216172 1344.72