Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme08g00826 | GGCCGCCGCGAATCTTCGACCGGACGCCGAAAACTCATTACTCTCTTCCCATCTCTACAACCCCGAAGTACGGGAGAGGGAAATAAGCCGACGAAGCGGCGGAGGAGGAGGAGCAAAGCGAAGGAGGGAGGCGGGGGGGCGGGGTCGTTGAAGAAGAGGAAGCTGAGTTCAGAGCAAGTGAAGCTTTTGGAGATGAACTTTGGGAATGAACATAAATTGGAATCGGAGAGGAAAGATCGGTTGGCTTCTGAATTGGGACTTGATCCACGGCAGGTGGCGGTTTGGTTTCAGAACCGCCGTGCACGGTGGAAGAATAAGAAGCTGGAAGAGGAATATTCCACTCTTAAAAAAGCTCATGATTCTGTTCTTCTACAAAAATCCCATCTTGAATCTGAGTTGGTGAAAGTGAAAGAGCAATTGAAAGAAGCAAAGAACGAGATACGAAAAATGGTAGAAGGAAGTGAGGTGAGAAATAATTCAAGCAATAGCCCAAGCTCTTCAGTGACAATGGAAGCAGTTGAGGAAGCAGCAGTAGTTCCTTTGGGAGAGCTTTTCTTTGAAGAATATGAAGATGTATTCTATTGCATGCAAGACAACAATTACAATCAAGGATTGGACTGGGCGCTTAATCTTAATTTTATGTAG | 645 | 46.05 | GRRESSTGRRKLITLFPSLQPRSTGEGNKPTKRRRRRSKAKEGGGGAGSLKKRKLSSEQVKLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHDSVLLQKSHLESELVKVKEQLKEAKNEIRKMVEGSEVRNNSSNSPSSSVTMEAVEEAAVVPLGELFFEEYEDVFYCMQDNNYNQGLDWALNLNFM | 214 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 5480551 | 5482026 | + | MELO3C007809.2.1 | Cme08g00826 | 335089 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme08g00826 | 214 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - | |
Cme08g00826 | 214 | CDD | homeodomain | 51 | 107 | IPR001356 | GO:0003677 | |
Cme08g00826 | 214 | Coils | Coil | 98 | 157 | - | - | |
Cme08g00826 | 214 | Gene3D | - | 45 | 114 | - | - | |
Cme08g00826 | 214 | SMART | HOX_1 | 49 | 110 | IPR001356 | GO:0003677 | |
Cme08g00826 | 214 | ProSitePatterns | 'Homeobox' domain signature. | 81 | 104 | IPR017970 | GO:0000981|GO:0006355 | |
Cme08g00826 | 214 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 25 | 208 | IPR045224 | GO:0003700 | |
Cme08g00826 | 214 | Pfam | Homeodomain | 52 | 105 | IPR001356 | GO:0003677 | |
Cme08g00826 | 214 | PRINTS | Lambda-repressor HTH signature | 77 | 86 | IPR000047 | GO:0003677 | |
Cme08g00826 | 214 | PRINTS | Lambda-repressor HTH signature | 86 | 102 | IPR000047 | GO:0003677 | |
Cme08g00826 | 214 | MobiDBLite | consensus disorder prediction | 11 | 26 | - | - | |
Cme08g00826 | 214 | SUPERFAMILY | Homeodomain-like | 50 | 115 | IPR009057 | - | |
Cme08g00826 | 214 | ProSiteProfiles | 'Homeobox' domain profile. | 46 | 106 | IPR001356 | GO:0003677 | |
Cme08g00826 | 214 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40 | 25 | 208 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme08g00826 | Cme-Chr8:5480551 | Cme08g01238 | Cme-Chr8:8830220 | 2.76E-27 | dispersed | |
Cme07g01707 | Cme-Chr7:22615160 | Cme08g00826 | Cme-Chr8:5480551 | 1.07E-41 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41816 | PF00046 | Homeodomain | 5.80E-17 | CL0123 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme08g00826 | K09338 | - | csv:101216890 | 304.293 |