Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00826 GGCCGCCGCGAATCTTCGACCGGACGCCGAAAACTCATTACTCTCTTCCCATCTCTACAACCCCGAAGTACGGGAGAGGGAAATAAGCCGACGAAGCGGCGGAGGAGGAGGAGCAAAGCGAAGGAGGGAGGCGGGGGGGCGGGGTCGTTGAAGAAGAGGAAGCTGAGTTCAGAGCAAGTGAAGCTTTTGGAGATGAACTTTGGGAATGAACATAAATTGGAATCGGAGAGGAAAGATCGGTTGGCTTCTGAATTGGGACTTGATCCACGGCAGGTGGCGGTTTGGTTTCAGAACCGCCGTGCACGGTGGAAGAATAAGAAGCTGGAAGAGGAATATTCCACTCTTAAAAAAGCTCATGATTCTGTTCTTCTACAAAAATCCCATCTTGAATCTGAGTTGGTGAAAGTGAAAGAGCAATTGAAAGAAGCAAAGAACGAGATACGAAAAATGGTAGAAGGAAGTGAGGTGAGAAATAATTCAAGCAATAGCCCAAGCTCTTCAGTGACAATGGAAGCAGTTGAGGAAGCAGCAGTAGTTCCTTTGGGAGAGCTTTTCTTTGAAGAATATGAAGATGTATTCTATTGCATGCAAGACAACAATTACAATCAAGGATTGGACTGGGCGCTTAATCTTAATTTTATGTAG 645 46.05 GRRESSTGRRKLITLFPSLQPRSTGEGNKPTKRRRRRSKAKEGGGGAGSLKKRKLSSEQVKLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHDSVLLQKSHLESELVKVKEQLKEAKNEIRKMVEGSEVRNNSSNSPSSSVTMEAVEEAAVVPLGELFFEEYEDVFYCMQDNNYNQGLDWALNLNFM 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5480551 5482026 + MELO3C007809.2.1 Cme08g00826 335089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00826 214 MobiDBLite consensus disorder prediction 1 57 - -
Cme08g00826 214 CDD homeodomain 51 107 IPR001356 GO:0003677
Cme08g00826 214 Coils Coil 98 157 - -
Cme08g00826 214 Gene3D - 45 114 - -
Cme08g00826 214 SMART HOX_1 49 110 IPR001356 GO:0003677
Cme08g00826 214 ProSitePatterns 'Homeobox' domain signature. 81 104 IPR017970 GO:0000981|GO:0006355
Cme08g00826 214 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 25 208 IPR045224 GO:0003700
Cme08g00826 214 Pfam Homeodomain 52 105 IPR001356 GO:0003677
Cme08g00826 214 PRINTS Lambda-repressor HTH signature 77 86 IPR000047 GO:0003677
Cme08g00826 214 PRINTS Lambda-repressor HTH signature 86 102 IPR000047 GO:0003677
Cme08g00826 214 MobiDBLite consensus disorder prediction 11 26 - -
Cme08g00826 214 SUPERFAMILY Homeodomain-like 50 115 IPR009057 -
Cme08g00826 214 ProSiteProfiles 'Homeobox' domain profile. 46 106 IPR001356 GO:0003677
Cme08g00826 214 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40 25 208 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00826 Cme-Chr8:5480551 Cme08g01238 Cme-Chr8:8830220 2.76E-27 dispersed
Cme07g01707 Cme-Chr7:22615160 Cme08g00826 Cme-Chr8:5480551 1.07E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41816 PF00046 Homeodomain 5.80E-17 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00826 K09338 - csv:101216890 304.293