Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00827 ATGGAATGGACTCAAACAACAGTGAAACTAGAAAACGGGGGTGCTGCTCCAAAAATGGCGGACCATTCCGATGAACAACACTCCTTTAGAACAATTACCACTGCTTTCATTCCGTTCATTGGAGACGACGATTCTGATGATTCGGGTTCTGAGTTCGTCTTCAACATCGAACCCACTTTGCTCATTGACCCTCATTGTTTGAAGATTGGTGAAGTTATGGGGGAAGGTTCATGCTCCATTGTCTATGAAGGATTGTGGCCTGTCGCCGTGAAGATTATACAGCCAATTAGAGCATCAGCTATAAGTCCTGAAAAGAAGGAGAGATTTCAGAGGGAGGTTACGTTGCTAGCTAGACTGAATCATGAGAACATTATTAAGTTCATTGGTGCTTCCATAGAGCCAACATTGATGATAATCACTGAGCTTATGAGAGGTGGAACGCTCCAGAAGTACCTATGGAGCTTCCGGCCAGAGACCCCAGATTTGAAGTTTTCCTTAAGTATTGCTCTAGATCTATCGCGAGTAATGACATACTTGCATTCAAATGGCATCATTTATCGCGATTTAAAGCCAAGCAATCTACTGCTGACAGAAGACAAGCAACGGGTTAAGCTGGCAAATTTTGGGTTGGCTAGAGAGGAAATATCTGGTGAAATGACTACTGAGGCTGGTACTTACCGTTGGATGGCCCCTGAGTTATTTAGCATAGATCCATTGCCTGTTGGATGTAAGAAATGCTACGATCACAAGGCAGATGTCTACAGCTTCTCAATAATTCTTTGGGAATTGCTGACAAACAAGACTCCATTCAAAGGCAGAAATGACATAATGGTTGCATATGCTGTATCCAAGAACATAAGACCAAGTCTTGAGGAAATCCCAGAAGATATGGCCCCTCTATTGCAGTCATGTTGGGCTGAGGATCCCAATAACCGTCCAGAATTTACAGAAGTCACAGATTCTCTTAGTAATCTCCTTCAATCATTTGTCTTAAAAGAATCTTCACTTCCTAACATGAATGACAAAACAGAGGAGGAGGAGGAGGAGGAGGTCAAGTGTACATCAAACACATCATTTTCTCAGAGAAAGAGAGAGCCAAAGGCTGGAAGACATAGAAACTCTTCATTCTGCCTTAAATGTTGCCACAACTCCTGCTTGTCTGATTAA 1167 42.59 MEWTQTTVKLENGGAAPKMADHSDEQHSFRTITTAFIPFIGDDDSDDSGSEFVFNIEPTLLIDPHCLKIGEVMGEGSCSIVYEGLWPVAVKIIQPIRASAISPEKKERFQREVTLLARLNHENIIKFIGASIEPTLMIITELMRGGTLQKYLWSFRPETPDLKFSLSIALDLSRVMTYLHSNGIIYRDLKPSNLLLTEDKQRVKLANFGLAREEISGEMTTEAGTYRWMAPELFSIDPLPVGCKKCYDHKADVYSFSIILWELLTNKTPFKGRNDIMVAYAVSKNIRPSLEEIPEDMAPLLQSCWAEDPNNRPEFTEVTDSLSNLLQSFVLKESSLPNMNDKTEEEEEEEVKCTSNTSFSQRKREPKAGRHRNSSFCLKCCHNSCLSD 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5484208 5487792 + MELO3C007810.2.1 Cme08g00827 335090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00827 388 PRINTS Tyrosine kinase catalytic domain signature 251 273 IPR001245 GO:0004672|GO:0006468
Cme08g00827 388 PRINTS Tyrosine kinase catalytic domain signature 178 196 IPR001245 GO:0004672|GO:0006468
Cme08g00827 388 PRINTS Tyrosine kinase catalytic domain signature 293 315 IPR001245 GO:0004672|GO:0006468
Cme08g00827 388 PRINTS Tyrosine kinase catalytic domain signature 140 153 IPR001245 GO:0004672|GO:0006468
Cme08g00827 388 SMART serkin_6 67 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00827 388 MobiDBLite consensus disorder prediction 336 373 - -
Cme08g00827 388 PANTHER SERINE-THREONINE PROTEIN KINASE 43 352 - -
Cme08g00827 388 SUPERFAMILY Protein kinase-like (PK-like) 60 335 IPR011009 -
Cme08g00827 388 Gene3D Transferase(Phosphotransferase) domain 1 54 362 - -
Cme08g00827 388 CDD STKc_MAP3K-like 73 322 - -
Cme08g00827 388 ProSiteProfiles Protein kinase domain profile. 67 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00827 388 MobiDBLite consensus disorder prediction 1 24 - -
Cme08g00827 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Cme08g00827 388 PANTHER PROTEIN KINASE ATN1-LIKE PROTEIN-RELATED 43 352 - -
Cme08g00827 388 Pfam Protein tyrosine and serine/threonine kinase 67 322 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00827 Cme-Chr8:5484208 Cme09g00431 Cme-Chr9:4118767 5.26E-79 dispersed
Cme08g00827 Cme-Chr8:5484208 Cme04g01834 Cme-Chr4:26066055 5.95E-82 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65082 PF07714 PK_Tyr_Ser-Thr 1.10E-49 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00827 - - cmo:103485027 753.051