Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00828 ATGGGGACAGGGGAAGAGGGCACGCCTTCTAAAACTTCCAAACCTCCCTCTTCATCCCAGGAAATAGCTCCAACACCTTCATATCCTGATTGGTCAAGCTCAGCTTATTATGGTGCTGGTGCTACTCCGCCTCCCTTCTTTGCATCTACTGTTGCTTCTCCAACTCCCCACCCTTACCTCTGGGGAGGTCAGCATCCTTTGATGTCACCTTATGGGACTCCACTACCTTATCCAGCTATATATCCTCCTGGGGGAGTTTATGCCCATCCCAATATTACTGTGACTCCTGGCTCTGTACCAATCAATGCTGAATATGAAGGGAAATCCCCTGATGGAAAAGAAAGGGCCTCAAAAAAATCAAAGGGCATGTCAGGAAATACTGCTTCAGGTGGTGGTAGGACTGGGGAGAGTGGAAAGGTGGCTTCAAGTTCTGGAAATGATGGTGCTTCTCAAAGTGCCGAAAGTGGTACCGAGGGCTCATCAGAAGGCAGTGATGAGAATGCTAACCAACAGGAAATTGCTGCAAATAAGAAAGGAAGCTTCAACCAGATGCTGGCAGATGGAGCCAATGCACAAAACAACACAGGTGGACCAAATGCCAAATCTTCAGTGACTGGGAAACCCATCGCCAACATTCCTGGAACTAATCTGAACATGGGAATGGATTTGTGGAATACCACCAATGCAGCTTCTGGGGCTGGAAAAGTGAGAGGAAATGCTGTCTCATCAGCTATTGTTTCTGTACCAATGGTTGGTCGTGATGGTATGATGCCTGAACAATGGGTTCAAGTATGA 795 47.55 MGTGEEGTPSKTSKPPSSSQEIAPTPSYPDWSSSAYYGAGATPPPFFASTVASPTPHPYLWGGQHPLMSPYGTPLPYPAIYPPGGVYAHPNITVTPGSVPINAEYEGKSPDGKERASKKSKGMSGNTASGGGRTGESGKVASSSGNDGASQSAESGTEGSSEGSDENANQQEIAANKKGSFNQMLADGANAQNNTGGPNAKSSVTGKPIANIPGTNLNMGMDLWNTTNAASGAGKVRGNAVSSAIVSVPMVGRDGMMPEQWVQV 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5489091 5493681 + MELO3C007811.2.1 Cme08g00828 335091

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00828 264 Pfam G-box binding protein MFMR 1 92 IPR012900 -
Cme08g00828 264 MobiDBLite consensus disorder prediction 187 208 - -
Cme08g00828 264 MobiDBLite consensus disorder prediction 103 169 - -
Cme08g00828 264 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 244 IPR044827 GO:0003700|GO:0006355|GO:0043565
Cme08g00828 264 PANTHER G-BOX-BINDING FACTOR 1 1 244 - -
Cme08g00828 264 MobiDBLite consensus disorder prediction 121 169 - -
Cme08g00828 264 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00828 K09060 GBF; plant G-box-binding factor - csv:101217128 500.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00153 Cme-Chr4:1163943 Cme08g00828 Cme-Chr8:5489091 3.47E-28 dispersed
Cme06g02145 Cme-Chr6:27241335 Cme08g00828 Cme-Chr8:5489091 1.89E-21 dispersed
Cme08g00828 Cme-Chr8:5489091 Cme11g01467 Cme-Chr11:21591424 2.03E-06 dispersed
Cme08g00828 Cme-Chr8:5489091 Cme06g02439 Cme-Chr6:31429038 2.77E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g930 . . Bda04g00063 Bda10g00121 . . . . . . . . Car03g00698 Car07g00439 Sed14g1098 Cpe19g00799 Cpe10g00596 Bhi03g01272 Tan03g1960 Cmetu08g0851 . Hepe04g1491 . . Cla01g01889 Cam01g1979 Cec04g1631 Cco04g1697 Clacu01g1999 Cmu01g1870 Cre04g1551 . . Cone6ag1607 Cone9ag1533 Lsi01g00696 . . Cme08g00828 Blo05g00785 Blo06g00126 . . Bpe10g00107 Bpe06g00053 . . . Cmo03g00796 . . . . . . . . . . . . . . . . . . . . . . Csa06g03222 Chy02g00666 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007671 2 3 2 0 2 0 2 1 1 1 1 0 0 1 1 1 1 2 2 0 1 1 1 1 1 1 1 3 1 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g00828 Cme_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0