Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00830 ATGAAGAAACCCACAGCAATTTCAGTTTCAGGATCGCCATTTTCACTTTCCTTTCTTATCTCCATCTTCTTCCTTTTCTTCTCTCTTCCTGCATATGCCGATGACGGATGGTGGGAAGGAGACAGTCCTGTGGTGAAAAGAGCCAATGAAAGAATCCAACTTCTCAAAACAGAGTACGGTGACATCTCCGCCGTTGATTTCGACGATGGCTCTCGATTTGGACCTTACCATCTTCAGTTCATCACATTGGAACCCAATTCACTGTTTCTCCCTGTTCTTCTTCATTCTGATATGGTGTTCTATATCCACACTGGGAGTGGGAGATTGAATTGGTTTGATGAAAATGATTTGAAGGAGGTGGATTTACGGCGGGGAGATCTTTATAGGCTTCATCCAGGCTCCATCTTTTACTTGCAGAGTAGCTTAGAGATCGAACGTGAAAAGCTTCGAATTTATGCTCTGTTTTCCAGCACAGATGAGGATTCATTCAATCCTTCCCTTGGAGCATACTCCCGCGTCACTGATCTGGTTCGTGGCTTCGGCAAAGAAGTTCTTCGTAAAGCTTTCATGGCCCCTGATGAAGTAATAGAGGAAATAATGACCGCGAAGAGGCCGCCGCTAATCGTCCACGCTGCTGCACCAACGCCGAGCATAAGGGCAAAGTCTTCGTCACCATGGGAATTTGAAGCTCGGTTATTGAAAGCTTTTCTAGGAGGGGACGCAAGTGGGATAGAATTCAACAAGAAGAAGAAGAAGAAGAAAGGCATATACAACGTTTATGAAGTAGACCCAGATTTTGAGAATTGCAATGGATGGAGTTTGACTGTAACCAAGAAAAACTCCCATCAATTGAAAGGCTCCAACATCGGCTTCCTCGTAGTCAACCTCACGGCGGGTTCAATGATGGGTCCGCATTGGAATCCGAGGGCGTGGGAGATTGGGATTGTGACATCGGACGAGCCGGGGGTGGTTCATGTAGGGTGTTCGAGCACCTCGGCAAACAGTTCAAAATGCAAGAATTGGAGTTTTGTGGTAGAGAAAGGGGACATATTTGTTGTGCCAAGGTTCCATCCAATGGCGCAAATGTCATTCAACAATGGAACATTTGTATTTGTGGGATTTAGCACGACCAATGGACATAACATGCCACAGTTCTTTGTCGGGAGTAGCTCTGTTTTGCAACTTGTGGACAGGGAAGTATTGGCATGGTCGTTTGATGTGAATGTGACAACGGTTGATCGGTTATTGAAAGCTAGAGTTGAGTCGATTATATTGGAATGTACTTCATGTGCCGAAGAGGAAGTAAGGAAAATGGAAGAGGAAGCTGAGAGAGAGAGAGAGGAGGAAGAAGAAAGAAAGCGAGAAGAGGAGGAACGGAGGAAAAGGGAAGAAGAGGAACAGAGGAAGAGGGAAGAGGAGGAACAGAGGAAAAGGGAAGAAGAGGAACGGAGGAAAAGGGAAGAAGAGGAAGAAGCAGAGAGAGAGGAAGAGAGGAAGAGAGAAGAGGAAGAAGCACAGAGAGAGGAAGAGAGGAGGAGGAGGAGAGAAGAGGAAGAGAAGAGAGAGAAAGAGAGAGAAGAGGAGGAACAGAGGAGGAGAGAAGAAGAAGAGCAACAGCAGGAGGAGGAAGAAGCACAGAGAGAGGAAGAGAGGAGGAGGAGGAGAGAAGAGGAAGAGAGAAAAAGAGAGGAAGAAGAGGGAGAGAAAGAGAGAGAAGAAGAGCAACAGCAGGAGGAGGAGGAAGCCAAAAGAGAGGAAGAAGAAGAGAGGAAGAGAGAGGAAGAAAGGGAGGCGAAGAGAGAGGAGGAGGAAGCTAGGGAGAGAGAGGAAGAGCATCAAAGAGAGAGAGGGAGGAGGCGGAGAGAGGCGGAGGAAGGACAGAGAAGACGGTGGGAGGAAGAAGAAGGAGAAGGAGAGGAGGAGGAGGAGGAGCAGCCAGTACTAAGAATTTTGTCACAATGGACTTGA 1968 47.15 MKKPTAISVSGSPFSLSFLISIFFLFFSLPAYADDGWWEGDSPVVKRANERIQLLKTEYGDISAVDFDDGSRFGPYHLQFITLEPNSLFLPVLLHSDMVFYIHTGSGRLNWFDENDLKEVDLRRGDLYRLHPGSIFYLQSSLEIEREKLRIYALFSSTDEDSFNPSLGAYSRVTDLVRGFGKEVLRKAFMAPDEVIEEIMTAKRPPLIVHAAAPTPSIRAKSSSPWEFEARLLKAFLGGDASGIEFNKKKKKKKGIYNVYEVDPDFENCNGWSLTVTKKNSHQLKGSNIGFLVVNLTAGSMMGPHWNPRAWEIGIVTSDEPGVVHVGCSSTSANSSKCKNWSFVVEKGDIFVVPRFHPMAQMSFNNGTFVFVGFSTTNGHNMPQFFVGSSSVLQLVDREVLAWSFDVNVTTVDRLLKARVESIILECTSCAEEEVRKMEEEAEREREEEEERKREEEERRKREEEEQRKREEEEQRKREEEERRKREEEEEAEREEERKREEEEAQREEERRRRREEEEKREKEREEEEQRRREEEEQQQEEEEAQREEERRRRREEEERKREEEEGEKEREEEQQQEEEEAKREEEEERKREEEREAKREEEEAREREEEHQRERGRRRREAEEGQRRRWEEEEGEGEEEEEEQPVLRILSQWT 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5500540 5503089 + MELO3C007813.2.1 Cme08g00830 335093

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00830 655 PANTHER OS03G0336100 PROTEIN-RELATED 18 476 - -
Cme08g00830 655 Gene3D Jelly Rolls 39 223 IPR014710 -
Cme08g00830 655 MobiDBLite consensus disorder prediction 481 538 - -
Cme08g00830 655 SUPERFAMILY RmlC-like cupins 14 419 IPR011051 -
Cme08g00830 655 MobiDBLite consensus disorder prediction 545 568 - -
Cme08g00830 655 Pfam Cupin 257 412 IPR006045 -
Cme08g00830 655 CDD cupin_7S_vicilin-like_C 264 422 - -
Cme08g00830 655 Coils Coil 428 634 - -
Cme08g00830 655 MobiDBLite consensus disorder prediction 569 583 - -
Cme08g00830 655 SMART Cupin_1_3 257 413 IPR006045 -
Cme08g00830 655 MobiDBLite consensus disorder prediction 584 634 - -
Cme08g00830 655 MobiDBLite consensus disorder prediction 481 655 - -
Cme08g00830 655 CDD cupin_7S_vicilin-like_N 54 211 - -
Cme08g00830 655 Gene3D Jelly Rolls 245 429 IPR014710 -
Cme08g00830 655 PANTHER PREPROMP73 18 476 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00830 - - - cmo:103485029 857.825
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02033 Cme-Chr1:29044550 Cme08g00830 Cme-Chr8:5500540 6.04E-16 dispersed
Cme08g00830 Cme-Chr8:5500540 Cme11g01778 Cme-Chr11:25961181 3.35E-45 dispersed
Cme08g00830 Cme-Chr8:5500540 Cme06g00593 Cme-Chr6:3824431 4.35E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g934 . . Bda04g00062 . . . Bma09g00063 . . . Cma03g00763 . . . Sed14g1100 . Cpe10g00599 Bhi03g01275 Tan03g1963 Cmetu08g1687 . Hepe04g1494 . . . . . . . . . . . . Cone9ag1535 Lsi01g00692 . . Cme08g00830 Blo05g00786 . . . . Bpe06g00052 . . . Cmo03g00792 . . . . . . . . . . . . . . . . . . . . . . Csa06g03224 Chy02g00664 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012868 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g00830 Cme_Chr08 FPKM 18.223709 18.156416 24.543295 24.192236 17.137259 17.617018 17.564857 24.121323 23.853359 24.184261