Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00831 ATGCCAGCCGATTTAGAGAATTCCCCGTCGGTTTCCGGCGAACCCACTGTCTCTTCCCTTGGAAACACCGATCCGCCGCCCAAATCCACCGCTAAGAAAAAAAGAAATCTACCCGGAATGCCAGATCCAGATGCGGAAGTGATTGCTCTCTCCCCGAAGACCCTTTTGGCCACAAATCGATTTGTTTGTGAGATTTGCAACAAAGGGTTTCAGAGAGATCAGAATCTGCAGCTTCATCGGCGTGGTCATAATCTTCCATGGAAGCTCCGGCAAAGGTCTAGTAATGAGGTGAAGAAGAAGGTCTATGTTTGCCCTGAGACTTCTTGTGTTCATCACGATCCTTCTAGAGCTCTGGGTGATTTGACTGGGATTAAGAAGCACTTTTGCAGAAAGCATGGTGAGAAGAAGTGGAAATGCGATAAATGTTCGAAGAAATACGCCGTTCAGTCTGATTGGAAAGCCCATTCCAAAATTTGTGGTACTAGAGAATACAAATGCGATTGTGGTACTCTTTTTTCCAGAAGGGATAGCTTCATTACCCATAGAGCTTTCTGTGATGCATTGGCAGAGGAAAGTGCAAAAGCTCAGCCTCAGTCGTTGGTGGACAAACCGGTTTCTGATTCTTCTCAGAAAGCGATGGAGCCGGTGGAGCCAAATCCAAAGCTATCTCCGCCGCCGTCACCTCCGGCGGCTGCATCTCCTCCTCAATCAGCTTGTGTTCTATCTCCTCCTCTCTTGCCGATTCAAAGTCAAGATCAATCGGAGAATCCATCCCAGTATAATGAAGAAGCACCTGTTACAACGGGCATGAGTGGTAGCTGCAGCAGCAGCAAGAGCCCTAGCAGCAACAGCAGTTCGAGTAGTCGATTTGCTAGCTTGTTTGCTTCCACTACTACATCCATAAGCCTGCAACCTCCTCAACCCCCCGCGTTTACTGACATGATACATGTTATGGCTTGTTCGGATCCCTCGTCTGACTATGCTCCAACGACGTCCACCGAGCCTATTTCTTTATGTCTTTCAACTAGCCATGGGGCATCAATTTTTGGGGCTGCTAGCCAAGACCTCCGACAGTACACACCAACTCCACAACCTGCAATGTCCGCCACTGCGTTACTACAAAAAGCTGCTCAAATGGGAGCAGCAGCTTCAAATGCCTCACTCCTTCGTGGTTTAGGCTTAGTACCATCATCCTCTTCGGCTACGCCACAAGAGAGCTCTCCATGGAATCAAAGGCAAGTTGAACCAGATGGAATCTCAATCGCTGCAGGGCTCGGGCTTGGGCTCCCTTGTGATGGAAACTCTGGATTGAAAGAACTAATGAGAGGCAACCATTCACTATTTGCTCCGAAACACACTACTCTCGATTTCCTTGGATTGGGTATGGCAGCTGGTGGTAGCCCCAACAACAGAGGATTGGCTGCACTAATCACATCGATCGGCGGAGGCATGGACGTTGGCACAACGACCGGATCCTATGGAGCTGGTGACATATCAAGCAAAGACATGAATAGAAACAATTAA 1524 48.56 MPADLENSPSVSGEPTVSSLGNTDPPPKSTAKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSNEVKKKVYVCPETSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESAKAQPQSLVDKPVSDSSQKAMEPVEPNPKLSPPPSPPAAASPPQSACVLSPPLLPIQSQDQSENPSQYNEEAPVTTGMSGSCSSSKSPSSNSSSSSRFASLFASTTTSISLQPPQPPAFTDMIHVMACSDPSSDYAPTTSTEPISLCLSTSHGASIFGAASQDLRQYTPTPQPAMSATALLQKAAQMGAAASNASLLRGLGLVPSSSSATPQESSPWNQRQVEPDGISIAAGLGLGLPCDGNSGLKELMRGNHSLFAPKHTTLDFLGLGMAAGGSPNNRGLAALITSIGGGMDVGTTTGSYGAGDISSKDMNRNN 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5504754 5507720 - MELO3C007814.2.1 Cme08g00831 335094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00831 507 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Cme08g00831 507 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 506 - -
Cme08g00831 507 MobiDBLite consensus disorder prediction 195 288 - -
Cme08g00831 507 Gene3D Classic Zinc Finger 41 111 - -
Cme08g00831 507 MobiDBLite consensus disorder prediction 9 26 - -
Cme08g00831 507 MobiDBLite consensus disorder prediction 1 45 - -
Cme08g00831 507 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Cme08g00831 507 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Cme08g00831 507 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Cme08g00831 507 MobiDBLite consensus disorder prediction 243 288 - -
Cme08g00831 507 MobiDBLite consensus disorder prediction 218 233 - -
Cme08g00831 507 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 506 - -
Cme08g00831 507 Gene3D Classic Zinc Finger 130 196 - -
Cme08g00831 507 SMART c2h2final6 137 157 IPR013087 -
Cme08g00831 507 SMART c2h2final6 61 83 IPR013087 -
Cme08g00831 507 SMART c2h2final6 102 132 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00481 Cme-Chr1:3468044 Cme08g00831 Cme-Chr8:5504754 5.50E-105 dispersed
Cme01g02839 Cme-Chr1:35310736 Cme08g00831 Cme-Chr8:5504754 3.36E-114 dispersed
Cme04g02537 Cme-Chr4:31606721 Cme08g00831 Cme-Chr8:5504754 2.18E-114 dispersed
Cme08g00831 Cme-Chr8:5504754 Cme11g00875 Cme-Chr11:11738322 2.58E-113 dispersed
Cme12g00305 Cme-Chr12:3952902 Cme08g00831 Cme-Chr8:5504754 7.23E-97 dispersed
Cme12g02049 Cme-Chr12:25956162 Cme08g00831 Cme-Chr8:5504754 1.45E-72 dispersed
Cme01g02060 Cme-Chr1:29401304 Cme08g00831 Cme-Chr8:5504754 1.09E-97 transposed
Cme06g01430 Cme-Chr6:13227737 Cme08g00831 Cme-Chr8:5504754 3.51E-11 transposed
Cme09g01288 Cme-Chr9:17800861 Cme08g00831 Cme-Chr8:5504754 7.74E-73 transposed
Cme03g01971 Cme-Chr3:27590275 Cme08g00831 Cme-Chr8:5504754 8.63E-135 wgd
Cme07g01703 Cme-Chr7:22570601 Cme08g00831 Cme-Chr8:5504754 3.92E-159 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41817 PF00096 zf-C2H2 0.0051 CL0361 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00831 K25869 - csv:101217597 907.901