Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme08g00831 | ATGCCAGCCGATTTAGAGAATTCCCCGTCGGTTTCCGGCGAACCCACTGTCTCTTCCCTTGGAAACACCGATCCGCCGCCCAAATCCACCGCTAAGAAAAAAAGAAATCTACCCGGAATGCCAGATCCAGATGCGGAAGTGATTGCTCTCTCCCCGAAGACCCTTTTGGCCACAAATCGATTTGTTTGTGAGATTTGCAACAAAGGGTTTCAGAGAGATCAGAATCTGCAGCTTCATCGGCGTGGTCATAATCTTCCATGGAAGCTCCGGCAAAGGTCTAGTAATGAGGTGAAGAAGAAGGTCTATGTTTGCCCTGAGACTTCTTGTGTTCATCACGATCCTTCTAGAGCTCTGGGTGATTTGACTGGGATTAAGAAGCACTTTTGCAGAAAGCATGGTGAGAAGAAGTGGAAATGCGATAAATGTTCGAAGAAATACGCCGTTCAGTCTGATTGGAAAGCCCATTCCAAAATTTGTGGTACTAGAGAATACAAATGCGATTGTGGTACTCTTTTTTCCAGAAGGGATAGCTTCATTACCCATAGAGCTTTCTGTGATGCATTGGCAGAGGAAAGTGCAAAAGCTCAGCCTCAGTCGTTGGTGGACAAACCGGTTTCTGATTCTTCTCAGAAAGCGATGGAGCCGGTGGAGCCAAATCCAAAGCTATCTCCGCCGCCGTCACCTCCGGCGGCTGCATCTCCTCCTCAATCAGCTTGTGTTCTATCTCCTCCTCTCTTGCCGATTCAAAGTCAAGATCAATCGGAGAATCCATCCCAGTATAATGAAGAAGCACCTGTTACAACGGGCATGAGTGGTAGCTGCAGCAGCAGCAAGAGCCCTAGCAGCAACAGCAGTTCGAGTAGTCGATTTGCTAGCTTGTTTGCTTCCACTACTACATCCATAAGCCTGCAACCTCCTCAACCCCCCGCGTTTACTGACATGATACATGTTATGGCTTGTTCGGATCCCTCGTCTGACTATGCTCCAACGACGTCCACCGAGCCTATTTCTTTATGTCTTTCAACTAGCCATGGGGCATCAATTTTTGGGGCTGCTAGCCAAGACCTCCGACAGTACACACCAACTCCACAACCTGCAATGTCCGCCACTGCGTTACTACAAAAAGCTGCTCAAATGGGAGCAGCAGCTTCAAATGCCTCACTCCTTCGTGGTTTAGGCTTAGTACCATCATCCTCTTCGGCTACGCCACAAGAGAGCTCTCCATGGAATCAAAGGCAAGTTGAACCAGATGGAATCTCAATCGCTGCAGGGCTCGGGCTTGGGCTCCCTTGTGATGGAAACTCTGGATTGAAAGAACTAATGAGAGGCAACCATTCACTATTTGCTCCGAAACACACTACTCTCGATTTCCTTGGATTGGGTATGGCAGCTGGTGGTAGCCCCAACAACAGAGGATTGGCTGCACTAATCACATCGATCGGCGGAGGCATGGACGTTGGCACAACGACCGGATCCTATGGAGCTGGTGACATATCAAGCAAAGACATGAATAGAAACAATTAA | 1524 | 48.56 | MPADLENSPSVSGEPTVSSLGNTDPPPKSTAKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSNEVKKKVYVCPETSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESAKAQPQSLVDKPVSDSSQKAMEPVEPNPKLSPPPSPPAAASPPQSACVLSPPLLPIQSQDQSENPSQYNEEAPVTTGMSGSCSSSKSPSSNSSSSSRFASLFASTTTSISLQPPQPPAFTDMIHVMACSDPSSDYAPTTSTEPISLCLSTSHGASIFGAASQDLRQYTPTPQPAMSATALLQKAAQMGAAASNASLLRGLGLVPSSSSATPQESSPWNQRQVEPDGISIAAGLGLGLPCDGNSGLKELMRGNHSLFAPKHTTLDFLGLGMAAGGSPNNRGLAALITSIGGGMDVGTTTGSYGAGDISSKDMNRNN | 507 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 5504754 | 5507720 | - | MELO3C007814.2.1 | Cme08g00831 | 335094 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme08g00831 | 507 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 61 | 83 | IPR013087 | - | |
Cme08g00831 | 507 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 2-LIKE | 1 | 506 | - | - | |
Cme08g00831 | 507 | MobiDBLite | consensus disorder prediction | 195 | 288 | - | - | |
Cme08g00831 | 507 | Gene3D | Classic Zinc Finger | 41 | 111 | - | - | |
Cme08g00831 | 507 | MobiDBLite | consensus disorder prediction | 9 | 26 | - | - | |
Cme08g00831 | 507 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
Cme08g00831 | 507 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 63 | 83 | IPR013087 | - | |
Cme08g00831 | 507 | SUPERFAMILY | beta-beta-alpha zinc fingers | 60 | 157 | IPR036236 | - | |
Cme08g00831 | 507 | Pfam | Zinc finger, C2H2 type | 61 | 83 | IPR013087 | - | |
Cme08g00831 | 507 | MobiDBLite | consensus disorder prediction | 243 | 288 | - | - | |
Cme08g00831 | 507 | MobiDBLite | consensus disorder prediction | 218 | 233 | - | - | |
Cme08g00831 | 507 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 1 | 506 | - | - | |
Cme08g00831 | 507 | Gene3D | Classic Zinc Finger | 130 | 196 | - | - | |
Cme08g00831 | 507 | SMART | c2h2final6 | 137 | 157 | IPR013087 | - | |
Cme08g00831 | 507 | SMART | c2h2final6 | 61 | 83 | IPR013087 | - | |
Cme08g00831 | 507 | SMART | c2h2final6 | 102 | 132 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme01g00481 | Cme-Chr1:3468044 | Cme08g00831 | Cme-Chr8:5504754 | 5.50E-105 | dispersed | |
Cme01g02839 | Cme-Chr1:35310736 | Cme08g00831 | Cme-Chr8:5504754 | 3.36E-114 | dispersed | |
Cme04g02537 | Cme-Chr4:31606721 | Cme08g00831 | Cme-Chr8:5504754 | 2.18E-114 | dispersed | |
Cme08g00831 | Cme-Chr8:5504754 | Cme11g00875 | Cme-Chr11:11738322 | 2.58E-113 | dispersed | |
Cme12g00305 | Cme-Chr12:3952902 | Cme08g00831 | Cme-Chr8:5504754 | 7.23E-97 | dispersed | |
Cme12g02049 | Cme-Chr12:25956162 | Cme08g00831 | Cme-Chr8:5504754 | 1.45E-72 | dispersed | |
Cme01g02060 | Cme-Chr1:29401304 | Cme08g00831 | Cme-Chr8:5504754 | 1.09E-97 | transposed | |
Cme06g01430 | Cme-Chr6:13227737 | Cme08g00831 | Cme-Chr8:5504754 | 3.51E-11 | transposed | |
Cme09g01288 | Cme-Chr9:17800861 | Cme08g00831 | Cme-Chr8:5504754 | 7.74E-73 | transposed | |
Cme03g01971 | Cme-Chr3:27590275 | Cme08g00831 | Cme-Chr8:5504754 | 8.63E-135 | wgd | |
Cme07g01703 | Cme-Chr7:22570601 | Cme08g00831 | Cme-Chr8:5504754 | 3.92E-159 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41817 | PF00096 | zf-C2H2 | 0.0051 | CL0361 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme08g00831 | K25869 | - | csv:101217597 | 907.901 |