Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00842 CTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCACTCACTCTGTTCTGACTTCTCTTTGCTTAAACAGCTTCACCGACGACCTCGCCGCCGTGATCTGTTCACTACCGGCGAGTTCCATTTCTATTTTTGTTCTGGCCGGAAAATGGCGAATATGTGTGCCGATAGTGGCAATCTTATGGCGATTGCTCAGCAAGTCATGAAGCAGAAGCAGCAACAGGAGCAGCAGCAGCAGCACCCACAGCACCAACCACAGCAGCTTACTGGACCCTGTACTTTCGGTCTCAACCCATGGAGCGCCTCGAACCATGCTTTGTCCGGGGCTCCAGATTTGGGGTTTGGGCTTACTGGAGCTGGATTTCCTGATCCGTTTCAGGTTCAGAGAGTGGTCGACAGTGGAGAAACGAGCTTTCAGTTTCCGAACTTGGAGCACCATTCTCCTGCTTTTAGATTTTCTGATTTCGACGGCGGTGCTGCGGCAGAGTTCGACTCTGATGAGTGGATGGAGAGTCTAATGGCTGGTGGAGATTCAACGGATAGCTCTAATCTTCCTTCTGGATGTGACGCGTGGCAATCTAATTCGGATTTTGCTTTCTACGCTGCCGATCCCTTTGTACCCTGTCCAAGTCGCCTCACTATCCCCTGTTCTTCACCCTCTGATCTTAACAGAGTCATTTTCCCTGACCCGCCCAAAAGTGAACCCGCCGTTGAACCGCCGGTGGTTTCGTGGACGGGGATTCCCCCAGCAACCCTATCGGCAGTGGTTAAGGACACTCAAATCCCCAACCCTCCCCTTGCTGTTCTCAAGAGCGAAGATAACGGCGGTTCTTCGAGCTCTGCAGAGACAGAATCGACTCCGCCACTACTTAAAACCCTAATTGAATGTGCTCGAATTTCCGAATCGGAGCCAGATCGAGCGGCTCAAACGTTGATTAAGCTTAAGGAATCATCATCAGACCATGGAGATCCGACGGAGCGGGTCGCCTTTTACTTTATGGATGCCCTTTGCCGGAGATTATCACTTCGATCGGATAGTCGTTTGATTTCTTGTGAATCCACTTCCGACGATTTCACTCTCTCTTACAAAGCTCTCAACGACGCTTGCCCTTACTCCAAATTCGCACATTTGACTGCAAATCAAGCTATCCTCGAGAGTACAGAAAACGCAAGCAAGATTCACATAATCGACTTCGGGATTGCTCAGGGAGTTCAATGGGCGGCGCTTCTACAAGCTCTTGCAACCCGCTCCACTGGAAAACCAACCGGAATCCGGATCTCCGGCATTCCAGCTCCAATGCTTGGAAACTGTCCAGCGACGGGGTTGTTCGCGACAGGTAACCGACTAGCCGAGTTCGCAAAGCTTCTGGAACTTAACTTCGAATTCGATCCAATTCTCACTCCAATCGAAGAACTGAACGAATCATCCTTCCAAATGGACACCGATGAAACCCTCGCCGTGAATTTCATGCTTCAATTGTACAACCTCCTGGACGAAACTCCCCGCGCCGTTCTCAACGTTCTTCAACTTGCCAAATCACTGAACCCTAAAATCGTAACCCTCGGCGAATACGAAGCAAGCCTAAACCGGGTCGGTTTCTTCAACCGGTTCAAGAACGCACTCAGACATTACTCAGCCGTGTTCGAATCACTTGACCCAAAACTACCTCGCGACTCAAACGAGCGGCTTCACCTAGAAAAGCTATTACTCGGCCGGCAAATCGGCGGACTTGTCGGACCGGAATCATCACCGGGATCGAAAACCGTACGAATGGAAGACAAAGAAGAATGGAAAAAGTTAATGGAAAGTTCAGGATTTGACTCAGTAAACCTGAGCCATTACGCAAAAAGCCAAGCTAAAATACTTTTATGGAAGTACGATTATAGCTCTGAGTATTCATTAATGGAATCCTCACCTGGGTTTCTCTCATTGGCATGGAACGAAGTCCCAATCATTACAGTT 1956 49.39 LSLSLSLSFSHSLCSDFSLLKQLHRRPRRRDLFTTGEFHFYFCSGRKMANMCADSGNLMAIAQQVMKQKQQQEQQQQHPQHQPQQLTGPCTFGLNPWSASNHALSGAPDLGFGLTGAGFPDPFQVQRVVDSGETSFQFPNLEHHSPAFRFSDFDGGAAAEFDSDEWMESLMAGGDSTDSSNLPSGCDAWQSNSDFAFYAADPFVPCPSRLTIPCSSPSDLNRVIFPDPPKSEPAVEPPVVSWTGIPPATLSAVVKDTQIPNPPLAVLKSEDNGGSSSSAETESTPPLLKTLIECARISESEPDRAAQTLIKLKESSSDHGDPTERVAFYFMDALCRRLSLRSDSRLISCESTSDDFTLSYKALNDACPYSKFAHLTANQAILESTENASKIHIIDFGIAQGVQWAALLQALATRSTGKPTGIRISGIPAPMLGNCPATGLFATGNRLAEFAKLLELNFEFDPILTPIEELNESSFQMDTDETLAVNFMLQLYNLLDETPRAVLNVLQLAKSLNPKIVTLGEYEASLNRVGFFNRFKNALRHYSAVFESLDPKLPRDSNERLHLEKLLLGRQIGGLVGPESSPGSKTVRMEDKEEWKKLMESSGFDSVNLSHYAKSQAKILLWKYDYSSEYSLMESSPGFLSLAWNEVPIITV 652
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 5556885 5558975 + MELO3C007823.2.1 Cme08g00842 335105
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00842 652 Pfam GRAS domain family 288 652 IPR005202 -
Cme08g00842 652 ProSiteProfiles GRAS family profile. 278 652 IPR005202 -
Cme08g00842 652 PANTHER SCARECROW-LIKE PROTEIN 4-RELATED 288 645 - -
Cme08g00842 652 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 288 645 IPR005202 -
Cme08g00842 652 MobiDBLite consensus disorder prediction 270 284 - -
Cme08g00842 652 MobiDBLite consensus disorder prediction 69 88 - -
Cme08g00842 652 MobiDBLite consensus disorder prediction 265 284 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01720 Cme-Chr7:22716402 Cme08g00842 Cme-Chr8:5556885 0 dispersed
Cme08g00842 Cme-Chr8:5556885 Cme04g00788 Cme-Chr4:9540036 3.20E-56 dispersed
Cme08g00842 Cme-Chr8:5556885 Cme11g01318 Cme-Chr11:20006693 1.17E-48 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41818 PF03514 GRAS 1.90E-103 CL0063 Cme TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00842 - - csv:101218550 1138.25